View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_10 (Length: 399)
Name: NF0235_1D_low_10
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 42343179 - 42342798
Alignment:
| Q |
18 |
acatcacttggtgttcaaaaaattctaccttgacctcttctaaaatctcttgtgttgtatgcattacatcccaaagtgaacgcgtaagcatgtccttggt |
117 |
Q |
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| T |
42343179 |
acatcacttggtgttcaaaaaattctaccttgacctcttctaaactctcttgtgttgtatgcattacatcccaaagtgaatgcgtaagcatgtccttggt |
42343080 |
T |
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| Q |
118 |
acaatagatgacctacaatgcaatgcaatatgttacattttctattannnnnnnaagagtagcttattgcattatcgaggtcaaagaagtcaccatagat |
217 |
Q |
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| T |
42343079 |
acaatagatgacctacaatgcaatgcaatatgttacattttctattatttttttaagagtagcttattgcattatcgaggtcaaagaagtcaccatagat |
42342980 |
T |
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| Q |
218 |
tgaaagaagtagttgttatgcatcggaacaatctttgaccattaaagtggagaaatctttgtttattcagactgttggaaataataatcaaataactaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342979 |
tgaaagaagtagttgttatgcatcggaacaatctttgaccattaaagtggaaaaatctttgtttattcagactgttggaaataataatcaaataactaat |
42342880 |
T |
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| Q |
318 |
ctctctctccctgctattaataggattttacttattgatcttggtttgcgaataaaatatggacatcaaagacattaaataa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |
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| T |
42342879 |
ctctctctccctgctattaataggattttacttattgatcttgctttgcgaataaaatatgaacataaaagacattaaataa |
42342798 |
T |
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