View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_11 (Length: 376)
Name: NF0235_1D_low_11
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_11 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 376
Target Start/End: Complemental strand, 781148 - 780786
Alignment:
| Q |
21 |
ctctccgaaacaatctcacaaatgtttac----gtcaatagatggcaaa---ggcttacctgactcataaattttttcatcatttcttgtttctcgagct |
113 |
Q |
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| T |
781148 |
ctctccaaaacaatctcacaaatgcttatatatgtcgatagatggcaaatgcggcttacctgactcataaatttcttcatcatttcctgtttctcgagct |
781049 |
T |
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| Q |
114 |
cctcacttgtaggaaggcccatagacttttgcctctgatcaaactgttgaacaatacaagataacattaatcaagacggatcatgcgaaacaaatacgat |
213 |
Q |
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| T |
781048 |
cctcgcttgtaggaaggcccatagacttctgtctctgatcaaactgttgaacaatacaagataacattaattaagacggatcatgcgaaacaaatacgat |
780949 |
T |
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| Q |
214 |
gacatattcaaaaacaaactagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaacttttt |
313 |
Q |
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| T |
780948 |
gacatattcaaaaacaaactagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaacttttt |
780849 |
T |
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| Q |
314 |
gggtgttaattagaggatcaccctttaccaaacatttctaccagtccatttgatcatgtttgg |
376 |
Q |
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| T |
780848 |
gggtgttaattagaggatcaccctttaccaaacatttccaccagtccatttgatcatgtttgg |
780786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 770437 - 770580
Alignment:
| Q |
233 |
tagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaactttttgggtgttaattagaggatc |
332 |
Q |
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| T |
770437 |
tagttaccatcatcttttcaacggtcattcgagtctcagaatccaggtcaccaagtttgctgcttgcaggttcaactttttgggtgttaatttcaggatc |
770536 |
T |
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| Q |
333 |
accctttaccaaacatttctaccagtccatttgatcatgtttgg |
376 |
Q |
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| T |
770537 |
acccttaacaagacatttccaccagtccatttgatcatgcttgg |
770580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 232 - 376
Target Start/End: Complemental strand, 785678 - 785534
Alignment:
| Q |
232 |
ctagttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaactttttgggtgttaattagaggat |
331 |
Q |
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| T |
785678 |
ctagttaccatcatcttttcaacagtctgtcgagtctcaggatcaaggtcaccaagtttgctgctctcaggttcaactttttgggtgttaatttcaggat |
785579 |
T |
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| Q |
332 |
caccctttaccaaacatttctaccagtccatttgatcatgtttgg |
376 |
Q |
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| T |
785578 |
cacccttaacgagacatttccaccagtccatttgatcatgtttgg |
785534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 786027 - 785909
Alignment:
| Q |
62 |
caaaggcttacctgactcataaattttttcatcatttcttgtttctcgagctcctcacttgtaggaaggcccatagacttttgcctctgatcaaactgtt |
161 |
Q |
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| T |
786027 |
caaaggtttacctgactcataaatttcttcatgatttcctgtttctggagctcctcacttgtaggaaggcccatagacttctgcctctgatcaaactgtt |
785928 |
T |
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| Q |
162 |
gaacaatacaagataacat |
180 |
Q |
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| T |
785927 |
aaataatacaagataacat |
785909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 770129 - 770242
Alignment:
| Q |
71 |
acctgactcataaattttttcatcatttcttgtttctcgagctcctcacttgtaggaaggcccatagacttttgcctctgatcaaactgtt-gaacaata |
169 |
Q |
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| T |
770129 |
acctggctcataaatttcttcatcatttcctctttctgaagctcctcgcttgtaggaaggcccatagacttttgcctctgatcaaactgttggaacaata |
770228 |
T |
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| Q |
170 |
caagataacattaa |
183 |
Q |
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| T |
770229 |
cagcataacattaa |
770242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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