View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_14 (Length: 341)
Name: NF0235_1D_low_14
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_14 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 14003582 - 14003250
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003582 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgt |
14003483 |
T |
|
| Q |
106 |
cgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatac |
205 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003482 |
cgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatac |
14003383 |
T |
|
| Q |
206 |
ctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttacaagatcaaaatatcatcatgtttgctgccct |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003382 |
ctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcacttgtttacaagatcaaaatatcatcatgtttgctgccct |
14003283 |
T |
|
| Q |
306 |
tttccccaatctgcagcagcttcatctcagtcg |
338 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
14003282 |
tttccccaatctgcagcagcttcatctcagtcg |
14003250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 336
Target Start/End: Original strand, 5767222 - 5767555
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgt |
105 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5767222 |
acatttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctctcaaccttggtaattgt |
5767321 |
T |
|
| Q |
106 |
cgcttgcgcagagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatac |
205 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767322 |
cgcttgctcacagtttccactttctttgctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcacaaatatccagggaaccaccatac |
5767421 |
T |
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| Q |
206 |
ctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctag---cacttgtttacaagatcaaaatatcatcatgtttgctgc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||| |
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| T |
5767422 |
ctaattctctgatggatcgtcttgtaaaccctcaattcaagtctctctttctggctagcgccgcttgtttagaagatcaaaatatcatcatgtttgctgc |
5767521 |
T |
|
| Q |
303 |
ccttttccccaatctgcagcagcttcatctcagt |
336 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5767522 |
ccttttccccaatctgcagcagcttcatctcagt |
5767555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 19468066 - 19468138
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat |
78 |
Q |
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|||||||||||||||| ||||| |||||||||||||| | ||||| | ||||||||||||||||||||||| |
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| T |
19468066 |
acatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat |
19468138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 458 - 390
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg |
74 |
Q |
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|||||||||||||||| |||| ||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
458 |
acatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg |
390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 55908286 - 55908376
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt |
96 |
Q |
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|||||||||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||| || | ||||| |||||| |
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| T |
55908286 |
acatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt |
55908376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 547454 - 547382
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat |
78 |
Q |
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|||||| ||||||||| |||||| |||||||| | |||| |||| ||| ||||||||||||||||||||| |
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| T |
547454 |
acatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat |
547382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 1037222 - 1037312
Alignment:
| Q |
6 |
acatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt |
96 |
Q |
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|||||||||||||||| |||| ||| |||||||||| ||| || |||||||||||||||||||||||| || | ||||| |||||| |
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| T |
1037222 |
acatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt |
1037312 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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