View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_16 (Length: 327)
Name: NF0235_1D_low_16
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 52720529 - 52720245
Alignment:
| Q |
20 |
aatacatcgtgatgattctgtataatttaataatgtagtattttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttatca |
119 |
Q |
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| T |
52720529 |
aatacattgtgatgattctgtataatgtaataatgtagtattt-agttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatca |
52720431 |
T |
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| Q |
120 |
gcaatcctaccatgccgatccacgcggccattgcttaccaagctactcgattccatttcctcctg-nnnnnnnnnaaatttaaaacaatatgacataaca |
218 |
Q |
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| T |
52720430 |
gcaatcctaccatgccgatccacgcggccattgcttaccaagctactcgattccatttcctcctgttttttttttaaatttaaaacaatatgacataaca |
52720331 |
T |
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| Q |
219 |
tgaaaaatgtgtaattatttatataatacattcaaataaagtaaagaaatattgccttgtaatatattttgctatgaggagtaacc |
304 |
Q |
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| T |
52720330 |
tgaaaaatgtgtaattatttatataatacattcaaataaagtatacaaatattgccttgtaatatatattgctatgaggagtaacc |
52720245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 52711639 - 52711361
Alignment:
| Q |
20 |
aatacatcgtgatgattctgtataatttaataatgtagtattttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttatca |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52711639 |
aatacattgtgatgattctgtataatttaataatgtagtattt-agttcatacttatgatgaagggagctgccttccatcctccggttgttcttttatta |
52711541 |
T |
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| Q |
120 |
gcaatcctaccatgccgatccacgcggccattgcttaccaagctactcgattccatttcctcctgnnnnnnnnnaaatttaaaacaatatgacataacat |
219 |
Q |
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| T |
52711540 |
gcaatcctaccttgccgatccacacggccattgcttaccaagctactcgattccatttcctcctg--ttttataaaattcaaaacaatatgacataacat |
52711443 |
T |
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| Q |
220 |
gaaaaatgtgtaattatttatataatacattcaaataaagtaaagaaatattgccttgtaatatattttgctatgaggagta |
301 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |
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| T |
52711442 |
gaaaaatacgtaattatttatataatacattcaaataaagtaaacaaatattgccttgtgatatatgttgctatgaggagta |
52711361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 52697939 - 52697816
Alignment:
| Q |
61 |
tttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttatcagcaatcctaccatgccgatccacgcggccattgcttaccaa |
160 |
Q |
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|||| ||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| || |||| || ||||| |
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| T |
52697939 |
tttatttcatacatatgatatagggagctgccttccatcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattactcaccaa |
52697840 |
T |
|
| Q |
161 |
gctactcgattccatttcctcctg |
184 |
Q |
| |
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|||| || | |||||||||||||| |
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| T |
52697839 |
gctattcaaatccatttcctcctg |
52697816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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