View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_2 (Length: 635)
Name: NF0235_1D_low_2
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_2 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 63 - 389
Target Start/End: Original strand, 11681305 - 11681633
Alignment:
| Q |
63 |
agtcgtagctttgtgttttggttcagctgtctctgaagggtgcatggaccttttgctgagatgctgcggtttgtgctggttttgctggggttttcactgt |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |
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| T |
11681305 |
agtcgtagctttgtgttttggttcagctgtctctgaagggtgcatggaccttttgctgtgatgctgcggtttgtgctagttttgctgggtttttgactgt |
11681404 |
T |
|
| Q |
163 |
ttgtctttgatgttttagcagtttaggcttgctgttctgttttggtgtgctggtcc--gtttcttcgcaccagttttaccgctgttgttgccgagtcttt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11681405 |
ttgtctttgatgttttagcagtttaggcttgctgttctgttttggtgtgctggcccctgtttcttcgcaccagttttaccgctgttgttgccgagtcttt |
11681504 |
T |
|
| Q |
261 |
ttaacttgttttggccttcttgtactatttaattcggccattccatgtactgccttgtgcgggtttttgagcgttaataaacttgagcaatgatattttg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11681505 |
ttaacttgttttggccttcttgtactatttaattcggccattctatgtactgccttgtgcgggtttttgagcgttaataaacttgagcaatggtattttg |
11681604 |
T |
|
| Q |
361 |
aataaccatattatttgatacacctttta |
389 |
Q |
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||||||||||||||||||||||| ||||| |
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| T |
11681605 |
aataaccatattatttgatacacttttta |
11681633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 542 - 619
Target Start/End: Original strand, 11681650 - 11681727
Alignment:
| Q |
542 |
tttctcttttaattggtcaaaaacaatgagattaatgaatgttatggtagaagctgaattgttcactgcttatgatgt |
619 |
Q |
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| T |
11681650 |
tttctcttttaattggtcaaaaacaatgagattaatgaatgttatggtagaagctgaattgttcaccgcttataatgt |
11681727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11681202 - 11681253
Alignment:
| Q |
1 |
ggaaatggagttgtctaggttgaagtcttctctatgtatgttctacgagatg |
52 |
Q |
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| T |
11681202 |
ggaaatggagttgtctaggttgaagtcttctctatgtatgttctacgagatg |
11681253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 408564 - 408668
Alignment:
| Q |
391 |
ttgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgt |
490 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
408564 |
ttgcctgtttggtatagtggtgggagcataaataccacttcccaatgctaatctaccatgatttttgggaagcttacaattgtagcttttgccaaaacgt |
408663 |
T |
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| Q |
491 |
gggta |
495 |
Q |
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||||| |
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| T |
408664 |
gggta |
408668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 396 - 506
Target Start/End: Complemental strand, 34785102 - 34784992
Alignment:
| Q |
396 |
tgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtgggta |
495 |
Q |
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||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||| |
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| T |
34785102 |
tgtttggtataatggtgggagcataaataccacttcccaatgctaatctaccgtgatttttgagaagcttaaaattgtagcttttgtcaaaacgtgggta |
34785003 |
T |
|
| Q |
496 |
cagatctgatc |
506 |
Q |
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||| ||||||| |
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| T |
34785002 |
caggtctgatc |
34784992 |
T |
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Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 387 - 506
Target Start/End: Original strand, 23667547 - 23667666
Alignment:
| Q |
387 |
ttaattgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaa |
486 |
Q |
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|||| ||||||||||||||| |||| |||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||| | |||||||||||||| |
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| T |
23667547 |
ttaagtgcctgtttggtataatggtgggagcataaataccacttcctaatgctaatttaccgtgatttttgggaagcttaaaagtgtagcttttgccaaa |
23667646 |
T |
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| Q |
487 |
acgtgggtacagatctgatc |
506 |
Q |
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| T |
23667647 |
acgtggatacaggtctgatc |
23667666 |
T |
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Target: scaffold0328 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 392 - 506
Target Start/End: Original strand, 7473 - 7587
Alignment:
| Q |
392 |
tgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtg |
491 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
7473 |
tgcctgtttggtatagtggcgggagcataaataccactttccaatgctaatttaccgtgatttttgagaagcttaaaattgtagcttttaccaaaacgtg |
7572 |
T |
|
| Q |
492 |
ggtacagatctgatc |
506 |
Q |
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|||||| ||||||| |
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| T |
7573 |
ggtacaagtctgatc |
7587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 392 - 506
Target Start/End: Complemental strand, 21733023 - 21732909
Alignment:
| Q |
392 |
tgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtg |
491 |
Q |
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|
|||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||| | ||||||| ||| ||||||||| ||||||||||||||||||| |
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| T |
21733023 |
tgcctgtttggtatagtggtgggagtataaataccacttcccaatgctaataaaccgtaatttttgagaaacttaaaattgtagcttttgccaaaacgtg |
21732924 |
T |
|
| Q |
492 |
ggtacagatctgatc |
506 |
Q |
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|
||||| | ||||||| |
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| T |
21732923 |
ggtactggtctgatc |
21732909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 491
Target Start/End: Original strand, 51268741 - 51268840
Alignment:
| Q |
392 |
tgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtg |
491 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||| |||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||| |
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| T |
51268741 |
tgcctgtttggtattgtggtgggagcataaataccacttctcaatgctaacctaccgtgatttttgagaagcttacaattgtagcttttgccaaaacgtg |
51268840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 423 - 506
Target Start/End: Complemental strand, 2094520 - 2094438
Alignment:
| Q |
423 |
taccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtgggtacagatctgatc |
506 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| | ||| |||||||||| ||||||| |
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| T |
2094520 |
taccacttcccaatactaatctaccgtgatttttgagaagcttaaaattgtagcttttagc-aaatgtgggtacaggtctgatc |
2094438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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