View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_20 (Length: 312)
Name: NF0235_1D_low_20
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 42342523 - 42342817
Alignment:
| Q |
1 |
tttctacatgtaaaatgttacaagtacagcatgaagtctactttataatagtattattgtttgcttatagtgaattacaaaatggatataggcagaagct |
100 |
Q |
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| T |
42342523 |
tttctacatgtaaaatgttacaagtacagcatgaagtctactttataatagtattattgtttgcttatagtgaattacaaaatggatataggcagaagct |
42342622 |
T |
|
| Q |
101 |
tacaatgattatctagtgacatccttctctagatatattagcattcaattacttagccactgtattattttacatctttccaaatgtgtcattcaatcat |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
42342623 |
tacaatgattatctagtgacatctttctctagatatattagcattcaattacttagccactatattattttacatctttccaaatgggtcattcaatcat |
42342722 |
T |
|
| Q |
201 |
agtttatttgagcttgtgcagattcaacagtttttgaaagagttagagggtgatttcctgaaggtaacaaacatcttatttaatgtctttgatgt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
42342723 |
agtttatttgagcttgtgcagattcaacagtttttgaaagagttagagggtgaattcctgaaggtaacaaacatcttatttaatgtcttttatgt |
42342817 |
T |
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