View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_22 (Length: 309)
Name: NF0235_1D_low_22
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 40630026 - 40629742
Alignment:
| Q |
24 |
gttttatcaagtggttgttcttgtcatttgtcaattataccatcacccaaaatatcttcttcccaactcctgcagattcaaaaatactcatcctcttcca |
123 |
Q |
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| T |
40630026 |
gttttatcaagtggttgttcttgtcatttgtcaattataccatcacccaaaatatcttcttcc-aactcctgcagattaaaaaatactcatcctcttcca |
40629928 |
T |
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| Q |
124 |
agtccaatcaaagaaacaaaccaaaccaatttacttactttcattcattaagaaaagtgtgcaacttcaaattacattcccaaaggagggttggaagtag |
223 |
Q |
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| T |
40629927 |
agtccaatcaaagaaacaaaccaaaccaatttacttactttcattcattaaaaaaagtgtgcaacttcaaatgacattcccaaaggagggttggaagcag |
40629828 |
T |
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| Q |
224 |
agcaagagtacattccttactatatttggnnnnnnnnnnnnnnnntattagttaattaggcagagctgaggtcgcatggctagctt |
309 |
Q |
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| T |
40629827 |
agcaagagtacattccttactatatttggaaaaacaaataaaaaatattagttaattaggcagagctgaggttgcatggctagctt |
40629742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 40655013 - 40655133
Alignment:
| Q |
110 |
ctcatcctcttccaagtccaatcaaagaaacaaaccaaaccaatttacttactttcattcattaagaaaagtgtgcaacttcaaattacattcccaaagg |
209 |
Q |
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| T |
40655013 |
ctcatcctcctccaagtccaaacaaagaaacaaa--aaa--aatttacttactttcatta--taaaaaaattgtgcaa------attacattccaaaagg |
40655100 |
T |
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| Q |
210 |
agggttggaagtagagcaagagtacattcctta |
242 |
Q |
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| T |
40655101 |
agggttggaagcaaagcaagagtacattcctta |
40655133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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