View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235_1D_low_24 (Length: 287)
Name: NF0235_1D_low_24
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 5179663 - 5179397
Alignment:
| Q |
1 |
taccaaaactcagcaagataagtaactcagggttctattcatgtgaaaagtccatagattcatttagaaaggcaatgaattgagctgtagccatagaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5179663 |
taccaaaactcagcaagataagtaactcagggttctattcatgtgaaaagtccatagattcatttagaaaggcaatgaattgagctgtagccatagaact |
5179564 |
T |
|
| Q |
101 |
gaaatcagcacaataactactcatccgttaaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcagaagacagtttgaaaatattgca |
200 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5179563 |
gaaatcagcacaataacaactcatctgttaaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcagaagacagcttgaaaatattgca |
5179464 |
T |
|
| Q |
201 |
aggcagtaacactcagacttgaaaatcatgcagcttttgtagacaaaatcaacttaagtgatcatta |
267 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5179463 |
aggcagtaacactcagacttgaaaatcttgcagcttttgtagacaaaatcaacttaagggatcatta |
5179397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 5185805 - 5185575
Alignment:
| Q |
38 |
ttcatgtgaaaagtccatagattcatttagaaaggcaatgaattgagctgtagccatagaactgaaatcagcacaata---------actactcatccgt |
128 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
5185805 |
ttcatatgaaaagtttatagattcatttagaaaggaaatgaattgagctgtagccatagaactgaaatcagcacaatataggaagagcaaactcatcggt |
5185706 |
T |
|
| Q |
129 |
taaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcagaagacagtttgaaaatattgcaaggcagtaacactca--gacttgaaaat |
226 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||| ||||||| ||||||||| || || | || || ||| || |
|
|
| T |
5185705 |
taaagatacaaattttaaatcaatgaaggaagaaactaaaaatatttcagtagacagcttgaaaacattgcaaggtagcaatgcccattgatacgaagat |
5185606 |
T |
|
| Q |
227 |
catgcagcttttgtagacaaaatcaacttaa |
257 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
5185605 |
catgcagcttttgtagaaaaaatcaacttaa |
5185575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 1795168 - 1795282
Alignment:
| Q |
1 |
taccaaaactcagcaagataagtaactcagggttctattcatgtgaaaagtccatagattcatttagaaaggcaatgaattgagctgtagccatagaact |
100 |
Q |
| |
|
|||||||| | | ||||||||||||||||| ||| | |||||||||||||| |||||||||| |||| ||| || |||||||| ||||||||||||||| |
|
|
| T |
1795168 |
taccaaaattgatcaagataagtaactcagtgttatgttcatgtgaaaagtttatagattcatatagagaggaaaggaattgagatgtagccatagaact |
1795267 |
T |
|
| Q |
101 |
gaaatcagcacaata |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1795268 |
gaaatcagcacaata |
1795282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 6232292 - 6232143
Alignment:
| Q |
56 |
agattcatttagaaaggcaatgaattgagctgtagccatagaactgaaatcagcacaata---------actactcatccgttaaagatacgtattttaa |
146 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |
|
|
| T |
6232292 |
agattcacttagaaaggaaatgaattgagctgtagccatagaactgaaatcagcacaatataggaagagcaaactcatcggttaaagatac-------aa |
6232200 |
T |
|
| Q |
147 |
ataaatgaaggaagaaaataaaaatatttcagaagacagtttgaaaatattgcaagg |
203 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
6232199 |
atcaatgaaggaagaaactaaaaatatttcagtagacagcttgaaaacattgcaagg |
6232143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 29798304 - 29798245
Alignment:
| Q |
119 |
actcatccgttaaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcag |
178 |
Q |
| |
|
||||||| ||| ||||||| ||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
29798304 |
actcatcggttgaagatactaattttaaatcaatgaagcaagaaaataaaaatatttcag |
29798245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 5056414 - 5056470
Alignment:
| Q |
59 |
ttcatttagaaaggcaatgaattgagctgtagccatagaactgaaatcagcacaata |
115 |
Q |
| |
|
|||||||||||||| ||||| | | ||| | ||||||||||||||||||||||||| |
|
|
| T |
5056414 |
ttcatttagaaaggtgatgaactcacctggaaccatagaactgaaatcagcacaata |
5056470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5175876 - 5175762
Alignment:
| Q |
1 |
taccaaaactcagcaagataagtaactcagggttctattcatgtgaaaagtccatagattcatttagaaaggcaatgaattgagctgtagccatagaact |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
5175876 |
taccaaaattcagccagataagtaactcagggttctattcatgtgagaagtctatagattcatttagaaaggcaatgaattcagctatagccatataact |
5175777 |
T |
|
| Q |
101 |
gaaatcagcacaata |
115 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
5175776 |
gaaatctgcacaata |
5175762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 5179397 - 5179315
Alignment:
| Q |
127 |
gttaaagatacgtattttaaataaatgaaggaagaaaataaaaatatttcagaagacagtttgaaaatattgcaaggcagtaa |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||| ||||| |
|
|
| T |
5179397 |
gttaaagatacgaattttaaatcaatgaaggaagaaaataaagatatttcagtagacagcttgaaaacattgcaaggtagtaa |
5179315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2003 times since January 2019
Visitors: 2396