View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_29 (Length: 260)
Name: NF0235_1D_low_29
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 180
Target Start/End: Original strand, 37283195 - 37283365
Alignment:
| Q |
7 |
catgacccccaagatatagctgttgcacgagacaggattgcatccttgatcctcttcttgaacagaatccttacttcatataatttccttttacctaaac |
106 |
Q |
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| T |
37283195 |
catgacccccaagatatagctcttgcaccagacaggattgcatccttgatcctctt---gaacagaatccttacttcatataatttccttttacctaaac |
37283291 |
T |
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| Q |
107 |
gctattctcattggagtagtagctttgaattaaccattcttgccaataccaatccaaaagccagggcaacacca |
180 |
Q |
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| T |
37283292 |
gctattctcattgcagtagtagctttgaattaaccattcttgccaataccaatccaaaagccagtgcagcacca |
37283365 |
T |
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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 37106168 - 37106109
Alignment:
| Q |
181 |
tttagctatggagcaggacatgttcaaccaaacagtgcaatggatcctggtcttgtttat |
240 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37106168 |
tttagctacggagcaggacatgttcaaccaaacagtgcaatggatcctggtcttgtttat |
37106109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 31061545 - 31061499
Alignment:
| Q |
194 |
caggacatgttcaaccaaacagtgcaatggatcctggtcttgtttat |
240 |
Q |
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| T |
31061545 |
caggacatattcaacccaacagtgcaatagatcctggacttgtttat |
31061499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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