View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235_1D_low_32 (Length: 245)

Name: NF0235_1D_low_32
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235_1D_low_32
NF0235_1D_low_32
[»] chr4 (3 HSPs)
chr4 (14-157)||(53790586-53790732)
chr4 (109-150)||(10482312-10482353)
chr4 (7-60)||(53774866-53774919)
[»] chr7 (8 HSPs)
chr7 (7-150)||(19344473-19344619)
chr7 (7-150)||(19374782-19374928)
chr7 (7-140)||(19325887-19326029)
chr7 (7-62)||(12819905-12819960)
chr7 (22-62)||(29430990-29431030)
chr7 (7-62)||(14076704-14076759)
chr7 (7-62)||(14386732-14386787)
chr7 (13-62)||(660836-660885)
[»] chr6 (4 HSPs)
chr6 (7-134)||(24254340-24254470)
chr6 (7-62)||(17369690-17369745)
chr6 (7-49)||(6921352-6921394)
chr6 (7-49)||(6947882-6947924)
[»] chr5 (3 HSPs)
chr5 (7-69)||(29597534-29597596)
chr5 (14-59)||(29642392-29642437)
chr5 (14-59)||(29647709-29647754)
[»] chr2 (3 HSPs)
chr2 (22-63)||(18908797-18908838)
chr2 (22-63)||(18913545-18913586)
chr2 (22-63)||(18920753-18920794)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 53790586 - 53790732
Alignment:
Q  14 ttgaacaatcttggacccaattccttaaaattagttttcagaatcttcatgtagatgctaggtttagtgactggagtaattatca---atttatgttccc 110  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||  ||  ||||||||||||| | | |||||   ||||||||||||    
T  53790586 ttgaacaatcttggactcaatttcttaaaattagttttcagaatcttcaagtagataataattttagtgactggaatcagtatcagacatttatgttccc 53790685  T
Q  111 attgtgtctttctaagaatggtgatacactgatataggcaggctctc 157  Q
    ||||||||||||| |||||||||| |||||||||| |||| ||||||    
T  53790686 attgtgtctttctgagaatggtgagacactgatattggcaagctctc 53790732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 10482312 - 10482353
Alignment:
Q  109 ccattgtgtctttctaagaatggtgatacactgatataggca 150  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  10482312 ccattgtgtctttctaagaatggtgatacactaatattggca 10482353  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 53774866 - 53774919
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatctt 60  Q
    ||||| |||||| | |||||||| ||||||||||||||||||| ||||||||||    
T  53774866 tttggagttgaagagtcttggactcaattccttaaaattagttatcagaatctt 53774919  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 19344619 - 19344473
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttcatgtagatgctaggtttagtgactggagtaattatc---aattta 103  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||  |  |||| ||||||||||||| ||| | ||| ||   | ||||    
T  19344619 tttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttctaggggatgataggtttagtgaccggatttattgtccatatttta 19344520  T
Q  104 tgttcccattgtgtctttctaagaatggtgatacactgatataggca 150  Q
    |||| |||||||| |||||||| ||||||||||||||| ||| ||||    
T  19344519 tgtttccattgtggctttctaaaaatggtgatacactgctattggca 19344473  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 19374782 - 19374928
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttcatgtagatgctaggtttagtgactggagtaattatcaa---ttta 103  Q
    ||||| |||||||  |||||||| ||||| ||||||||||||||  ||||||||   || |||| ||||||||||||| ||| | ||||||||   ||||    
T  19374782 tttggagttgaacggtcttggactcaatttcttaaaattagtttaaagaatcttttagtggatgataggtttagtgaccggatttattatcaatgtttta 19374881  T
Q  104 tgttcccattgtgtctttctaagaatggtgatacactgatataggca 150  Q
    |||| |||||||| |||||||| ||||||||||||||| ||| ||||    
T  19374882 tgtttccattgtggctttctaaaaatggtgatacactgctattggca 19374928  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 19326029 - 19325887
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttcatgtagatg------ctaggtttagtgactggagtaattatcaat 100  Q
    ||||| || |||||||||||||| |||||| | ||||| |||||||||||| |||| |||||||       ||||||||| ||||||  | |||||||||    
T  19326029 tttggagtagaacaatcttggactcaattcatcaaaatcagttttcagaatgttcaagtagatgataggtttaggtttagcgactggtttcattatcaat 19325930  T
Q  101 ---ttatgttcccattgtgtctttctaagaatggtgatacact 140  Q
       ||||||||||||||||||||||| ||||| ||||||||||    
T  19325929 cgcttatgttcccattgtgtctttctgagaatagtgatacact 19325887  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 12819960 - 12819905
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttca 62  Q
    ||||| ||||||||||| ||||| |||||||||||||| |||| ||||||||||||    
T  12819960 tttggagttgaacaatcctggactcaattccttaaaatcagttgtcagaatcttca 12819905  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 29431030 - 29430990
Alignment:
Q  22 tcttggacccaattccttaaaattagttttcagaatcttca 62  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  29431030 tcttggacccaattccttaaaattagttatcaggatcttca 29430990  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 14076704 - 14076759
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttca 62  Q
    ||||| |||||| | |||||||| ||||| ||||||||||||| ||||||||||||    
T  14076704 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14076759  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 14386732 - 14386787
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttca 62  Q
    ||||| |||||| | |||||||| ||||| ||||||||||||| ||||||||||||    
T  14386732 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 14386787  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 660885 - 660836
Alignment:
Q  13 gttgaacaatcttggacccaattccttaaaattagttttcagaatcttca 62  Q
    |||||| | |||||||| ||||||||||||||||||| ||| ||||||||    
T  660885 gttgaagagtcttggactcaattccttaaaattagttatcataatcttca 660836  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 24254470 - 24254340
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttcatgtagatgctaggtttagtgactggagtaattatcaa---ttta 103  Q
    ||||| || |||||||||||||| |||||| | ||||| |||||| ||||| |||| ||||||| ||||||||||||||||| |  |||||||   ||||    
T  24254470 tttggagtcgaacaatcttggactcaattcatcaaaatcagttttgagaatgttcaagtagatgataggtttagtgactggaatcgttatcaatcgttta 24254371  T
Q  104 tgttcccattgtgtctttctaagaatggtga 134  Q
    |||||||||||||||||||| ||||||||||    
T  24254370 tgttcccattgtgtctttctgagaatggtga 24254340  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 17369690 - 17369745
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttca 62  Q
    ||||| |||||| | |||||||| ||||| ||||||||||||| ||||||||||||    
T  17369690 tttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttca 17369745  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 6921394 - 6921352
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagtt 49  Q
    ||||| |||||| |||||||||| |||||||||||||||||||    
T  6921394 tttggagttgaagaatcttggactcaattccttaaaattagtt 6921352  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 6947924 - 6947882
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagtt 49  Q
    ||||| |||||| |||||||||| |||||||||||||||||||    
T  6947924 tttggagttgaagaatcttggactcaattccttaaaattagtt 6947882  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 29597596 - 29597534
Alignment:
Q  7 tttggtgttgaacaatcttggacccaattccttaaaattagttttcagaatcttcatgtagat 69  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||    
T  29597596 tttggagttgaacaatcttggactcaattccttaaaattagttttcaaaatctacaggtagat 29597534  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 29642392 - 29642437
Alignment:
Q  14 ttgaacaatcttggacccaattccttaaaattagttttcagaatct 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  29642392 ttgaacaatcttggactcaattccttaaaattagttttcagaatct 29642437  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 29647709 - 29647754
Alignment:
Q  14 ttgaacaatcttggacccaattccttaaaattagttttcagaatct 59  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  29647709 ttgaacaatcttggactcaattccttaaaattagttttcaaaatct 29647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 18908838 - 18908797
Alignment:
Q  22 tcttggacccaattccttaaaattagttttcagaatcttcat 63  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  18908838 tcttggactcaattcctcaaaattagttttcaaaatcttcat 18908797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 18913586 - 18913545
Alignment:
Q  22 tcttggacccaattccttaaaattagttttcagaatcttcat 63  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  18913586 tcttggactcaattcctcaaaattagttttcaaaatcttcat 18913545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 18920794 - 18920753
Alignment:
Q  22 tcttggacccaattccttaaaattagttttcagaatcttcat 63  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  18920794 tcttggactcaattcctcaaaattagttttcaaaatcttcat 18920753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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