View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235_1D_low_37 (Length: 226)
Name: NF0235_1D_low_37
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 32592706 - 32592496
Alignment:
| Q |
7 |
atatttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592706 |
atatttgcatggactaaccttggtttcatactgaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctca |
32592607 |
T |
|
| Q |
107 |
acctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgcca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
32592606 |
acctcaccctgcaactcagcttcccttagagccacagctttagcagcttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgcca |
32592507 |
T |
|
| Q |
207 |
actcagtatta |
217 |
Q |
| |
|
|||||| |||| |
|
|
| T |
32592506 |
actcagaatta |
32592496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 31527260 - 31527412
Alignment:
| Q |
7 |
atatttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31527260 |
atatttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctca |
31527359 |
T |
|
| Q |
107 |
acctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgac |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31527360 |
acctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgac |
31527412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 37030630 - 37030828
Alignment:
| Q |
19 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||| ||||| || |
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|
| T |
37030630 |
actaaccttggtttcatattgaacactagctttgctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgt |
37030729 |
T |
|
| Q |
119 |
aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagtatta |
217 |
Q |
| |
|
||||||||||||||||| |||||| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||| |
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|
| T |
37030730 |
aactcagcttcccttagtttcacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
37030828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 51824717 - 51824842
Alignment:
| Q |
87 |
tcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtcca |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||| |||||||||||| ||||||||||| |
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|
| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca |
51824816 |
T |
|
| Q |
187 |
agctgctttcttcttcgccaactcag |
212 |
Q |
| |
|
||| ||||||||| |||||||||||| |
|
|
| T |
51824817 |
agccgctttcttcatcgccaactcag |
51824842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 51824290 - 51824353
Alignment:
| Q |
19 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagta |
82 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51824290 |
actaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagta |
51824353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 49208122 - 49208323
Alignment:
| Q |
9 |
atttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaac |
108 |
Q |
| |
|
||||||| ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49208122 |
atttgcaaggactaaccttagtgtcatattcaacactagctttgctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaac |
49208221 |
T |
|
| Q |
109 |
ctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaac |
208 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| | |||||||| ||||||||||| |||||| |
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|
| T |
49208222 |
ctcaccttgcaactcagcttcccttagagccacggctttagcagcctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaac |
49208321 |
T |
|
| Q |
209 |
tc |
210 |
Q |
| |
|
|| |
|
|
| T |
49208322 |
tc |
49208323 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 49212964 - 49213163
Alignment:
| Q |
11 |
ttgcatggactaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacct |
110 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
49212964 |
ttgcatggactaaccttagtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacct |
49213063 |
T |
|
| Q |
111 |
caccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactc |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||| || ||||| || |||||||| |
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|
| T |
49213064 |
caccttgcaactcagcttcccttagagccacagccttcttcgcctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactc |
49213163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 49188119 - 49188317
Alignment:
| Q |
19 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| ||| |
|
|
| T |
49188119 |
actaaccttggtttcatattgaacactagctttgctaagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgc |
49188218 |
T |
|
| Q |
119 |
aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagtatta |
217 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||| |
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|
| T |
49188219 |
aactcagcttcccttagagcaacagccttcttcgcctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaatta |
49188317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 49191855 - 49192053
Alignment:
| Q |
19 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
|
|
| T |
49191855 |
actaaccttggtttcatattgaacactagctttgctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgt |
49191954 |
T |
|
| Q |
119 |
aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagtatta |
217 |
Q |
| |
|
|||||||| ||||||||||| || ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||| |||| |
|
|
| T |
49191955 |
aactcagcatcccttagagcgacggctttggcagcctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaatta |
49192053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 49202961 - 49203159
Alignment:
| Q |
19 |
actaaccttggtttcatactcaacactagctttgctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgc |
118 |
Q |
| |
|
||||||||| |||||||| | |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
49202961 |
actaaccttagtttcatattgaacactagctttgctaaggaactcggctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcaccttgt |
49203060 |
T |
|
| Q |
119 |
aactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaactcagtatta |
217 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |||| |
|
|
| T |
49203061 |
aactcagcatcccttagagccacggccttcttcgcctcaacttcagccacctgagccgccttagtccaagctgccttcttcttagccaactcagaatta |
49203159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 26756489 - 26756689
Alignment:
| Q |
12 |
tgcatggactaaccttggtttcatactcaacactagctttgctaagta---aatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaac |
108 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |||| || | |||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26756489 |
tgcatggactaaccttggtttcata-tgtacactagctttactaattaggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaac |
26756587 |
T |
|
| Q |
109 |
ctcaccctgcaactcagcttcccttagagccacagctttagcagcctcgacttcagccacttgagccgccttagtccaagctgctttcttcttcgccaac |
208 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
26756588 |
ctcaccttgcaactcagcttccctaagggccacagctttagcagcctcaacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaac |
26756687 |
T |
|
| Q |
209 |
tc |
210 |
Q |
| |
|
|| |
|
|
| T |
26756688 |
tc |
26756689 |
T |
|
Back To:
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