View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_38 (Length: 222)
Name: NF0235_1D_low_38
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 10130105 - 10129933
Alignment:
| Q |
38 |
cttcttacaaggcttcttcatccttcacaaatgttgaatcccaattcgcatcccgtagatctgggtaagtagatttcacattttcagcacatttcatgtt |
137 |
Q |
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| T |
10130105 |
cttcttacaaggcttcttcatccttcacaaatgttgaatcccaattcgcatccagtagatctgggtaagtagatttcccattttcaacacatttcatgtt |
10130006 |
T |
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| Q |
138 |
cctctaggtgagaattgaggagcaaggccttgtttaaaacatcttctcttatccccttaatgaacccagcaac |
210 |
Q |
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| T |
10130005 |
cctgtaggtgagaattgaggagcaaggcccacttcagaacatcttctcttatccccataatgaacccagcaac |
10129933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10130173 - 10130130
Alignment:
| Q |
1 |
gccccttgactttccctttcttcttccttgtccagaacttctta |
44 |
Q |
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| T |
10130173 |
gccccctgactttccctttcttcttccctgtccagaacttctta |
10130130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 30227063 - 30226970
Alignment:
| Q |
49 |
gcttcttcatccttcacaaatgttgaatcccaattcgcatcccgtagatctgggtaagtagatttcacattttcagcacatttcatgttcctct |
142 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
30227063 |
gcttcttcatccttcacaaatgttgaatcccaatccgcatccagtagaactgggtaagtagatttcccattttcagcacatttaatgttcctct |
30226970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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