View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_43 (Length: 202)
Name: NF0235_1D_low_43
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 13797795 - 13797611
Alignment:
| Q |
8 |
tgaacgtgaataccattaaaacaataatggaagcttgtaagaaggtggtcgtctatccctgcctcacatgtcccccatgccagacatgtctagctcatac |
107 |
Q |
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| T |
13797795 |
tgaacgtgaataccattaaaacaataatggaagcttgtaagaagttggtcgtctatccctgcctcacatgtctcccatgcaaaacatgtctagctcgtac |
13797696 |
T |
|
| Q |
108 |
ctcatcgaaaggtgcaagtagctttaagttttaattttatataatatctaattaattaattaaataggctaagaaatgtgtcatattat |
196 |
Q |
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| T |
13797695 |
ctcatcgaaaggtccaagtagctttaagttttaattttatataatatctaattaa----ttaaataggctaagaaatgtgtcatattat |
13797611 |
T |
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