View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_1D_low_7 (Length: 471)
Name: NF0235_1D_low_7
Description: NF0235_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_1D_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 5 - 421
Target Start/End: Complemental strand, 7663526 - 7663110
Alignment:
| Q |
5 |
atgagcaatcacaacttttattcctctcatttcttatctcaaaaatatttaatttccctcgttggttattgctaccaccaaccacaaaattttatcgaaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663526 |
atgagcaatcacaacttttattcctctcatttcttatctcaaaaatatttgatttccctcgttggttattgctaccaccaaccacaaaattttatcgaaa |
7663427 |
T |
|
| Q |
105 |
agtgctgaatgcaaggcacgcactaccccaagcaatctcccttaacttgccacgcaatattttcttgaccattgaattatgctaacgcgttgaaaagtca |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663426 |
agtgctgaatgcaaggcacgcactaccccaagcaatctcccttaacttgtcacgcaatattttcttgaccattgaattatgctaacgcgttgaaaagtca |
7663327 |
T |
|
| Q |
205 |
aaaacatatctctaagcaaataaaacatgcatagagacaaactaaaaataatagatttactatgttttattttatgtttttccacattcttacgtccctc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663326 |
aaaacatatctctaagcaaataaaacatgcatagagacaaactaaaaataatagatttactatgttttattttatgtttttccacattcttacgtccctc |
7663227 |
T |
|
| Q |
305 |
tcaatcaatctcatcacgcatgatataacaaaattaatctaagtcatcaaagacagttattgaaaaataatgtctatatagtagttgaccatcacttcct |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663226 |
tcaatcaatctcatcacgcatgatataacaaaattaatctaagtcatcaaagacagttattgaaaaataatgtctatatagtagttgaccatcacttcct |
7663127 |
T |
|
| Q |
405 |
tcctaatttataaaaag |
421 |
Q |
| |
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||||||||||||||||| |
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| T |
7663126 |
tcctaatttataaaaag |
7663110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 406
Target Start/End: Complemental strand, 7660618 - 7660589
Alignment:
| Q |
377 |
tctatatagtagttgaccatcacttccttc |
406 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
7660618 |
tctatatagtagttgaccatcacttccttc |
7660589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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