View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0235_2D_high_20 (Length: 249)
Name: NF0235_2D_high_20
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0235_2D_high_20
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5460903 - 5461119
Alignment:
Q
1
ttaaagcttatgctcaataattgtttatgaagatttagtccaaataagtaacagctaaataatgttcacccaaacccttctgcttgcttccaaaactcac
100
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
T
5460903
ttaaagcttatgctcaataattgtttatgaagatttagtccaaataagtaacagctaaataatgttcacccaaacccttctgtt----------------
5460986
T
Q
101
cttgtgaacttccttatacttttcttgatcgaccaacttgacacaactaatcattattctaatcattgatattaatttcttctctcttttatatttttca
200
Q
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
5460987
-----gaacttccttatacttttcttgattgaccaacttgacacaactaatcattattctaatcattgatattaatttcttctctcttttatatttttca
5461081
T
Q
201
aactgtccatttcaaacataacctgtaatcactgatgt
238
Q
||||||||||||||||||||||||||||||||||||||
T
5461082
aactgtccatttcaaacataacctgtaatcactgatgt
5461119
T
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