View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_high_27 (Length: 216)
Name: NF0235_2D_high_27
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 37318393 - 37318208
Alignment:
| Q |
1 |
tctctctctcaaagtgtacaaatccatatgaagtgtactccaccaaacattatctaaaattacatatgagatatgaggagtgcaccgcacnnnnnnn-ac |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||| || |
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| T |
37318393 |
tctctctctcaaagtgtacaaatccatatgaagtgtactccaccaaacattttctaaaattccatat-------------tgtaccgcacttttttttac |
37318307 |
T |
|
| Q |
100 |
cttccaacaacccatattttgcccccacaaataacctccttatctttctccttcatgtgactccccaactccaattccccctcccttgctggccactac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37318306 |
cttccaacaacccatattttgcccccacaaataacctccttatctttctccttcatgtgactccccaactccaattcctcctcccttgctggccactac |
37318208 |
T |
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