View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_1 (Length: 939)
Name: NF0235_2D_low_1
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 773; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 65 - 930
Target Start/End: Original strand, 32239767 - 32240633
Alignment:
| Q |
65 |
aatctatacatcttacaaagcatttgcttccaattttactgtgcaattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagt |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32239767 |
aatctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcggt |
32239866 |
T |
|
| Q |
165 |
tttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcat |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239867 |
tttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcat |
32239966 |
T |
|
| Q |
265 |
agctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagag |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239967 |
agctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagaa |
32240066 |
T |
|
| Q |
365 |
cctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgctactctctgtgggttttctggtttctgaggatatgta |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32240067 |
cctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgctgctctctgtgggttttctggtttctgaggatatgta |
32240166 |
T |
|
| Q |
465 |
gctgggtgctacgcctgttcctttttactttcnnnnnnnnngtgtgaggtttataggcttctgcggtgctctctggggtttccactcacagagcacctat |
564 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240167 |
gctgggtgctacgcctgttcctttttactttctttttttttgtgtgtggtttataggcttctgcggtgctctctggggtttccactcacagagcacctat |
32240266 |
T |
|
| Q |
565 |
aaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaatccccctgttttaatttaattttcacttggattggtt |
664 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32240267 |
aaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaacccccctgttttaatttaattttcacttggattggtt |
32240366 |
T |
|
| Q |
665 |
gattaaacaatgcattttatctgtcnnnnnnnncactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggt |
764 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240367 |
gattaaacaatgcattttatctgtc-tttttttcactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggt |
32240465 |
T |
|
| Q |
765 |
aattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacaatgcgtgtataa |
864 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32240466 |
aattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacactgcgtgtataa |
32240565 |
T |
|
| Q |
865 |
aagatgaaattcata--tgccctttttctctataaaatggtgcttgctgtgttcatttcatctcagtc |
930 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240566 |
aagatgaaattcatatgtgccctttttctctataaaatggtgcttgctgtgttcatttcatctcagtc |
32240633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 46470044 - 46470181
Alignment:
| Q |
64 |
taatctatacatcttacaaagcatttgcttccaattttactgtgcaattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcag |
163 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||||||| |||||| |
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| T |
46470044 |
taatctatacatcttacaaaggatttgcttccgattttactgtgcaattcccttccggtgagttccgctcttctccgcaattggcgctgatttatgtcag |
46470143 |
T |
|
| Q |
164 |
ttttctgtgcatggaggttttgtagctgtgttctatat |
201 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||||| |
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| T |
46470144 |
ttttctgtgcttggaggctttgtagctgtgttctatat |
46470181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 33435757 - 33435811
Alignment:
| Q |
116 |
ttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagttttctg |
170 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
33435757 |
ttccagcgaaatccgcccttctccgcgtttggcgctgaactctgtcagttttctg |
33435811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 50164922 - 50164878
Alignment:
| Q |
22 |
ttaacacctaaagaatattttacactaaaattagtctaccgataat |
67 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
50164922 |
ttaacacctaaagaatattt-acactaaaattagtctactgataat |
50164878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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