View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_14 (Length: 468)
Name: NF0235_2D_low_14
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 24 - 468
Target Start/End: Original strand, 25145699 - 25146141
Alignment:
| Q |
24 |
acactttgtgcttcatccaaatttctctgctacatttactataacatatagtctttataacttttaggtcaagaattgtagaaagttttaaagggaattn |
123 |
Q |
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| T |
25145699 |
acactttgtgcttcatccaaatttgtctgcttcatttactataacatatagtcttaataacttttaggtcaagaattgtagaaagttttaaagggaatta |
25145798 |
T |
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| Q |
124 |
nnnnnnnnnnnnnnnnnnnnnttatttcttatataaggtactctaaccaatgaaaaatggagaacatgtataatttcttagaggagaaaacatgatagag |
223 |
Q |
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| T |
25145799 |
aaacaaaaaaaagaaatat--ttatttcttatataaggtactctaaccaatgaaaaatggagaacatgtataatttcttagaggagaaaacatgatagag |
25145896 |
T |
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| Q |
224 |
agacgttaaaattttgtattatttggttgaaggttccaaaaagcttgaagctgaaaattgaagcacaaggaaagtatctagccagaattggacaaagtaa |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25145897 |
agacgttaaaattttgtattatttggttgaaggttccaaaaagcttgaagctgaagattgaagcacaaggaaagtatctagccagaattggacaaagtaa |
25145996 |
T |
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| Q |
324 |
tcaaatcagaaatataacaagaaaagcttgcaagccttttgtcggtaaagcaacccctttgccctctctttccgaggaatctgaatcctttaaaacacaa |
423 |
Q |
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||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25145997 |
tcaaatcagaacaattacaagaaaagcttgcaagccttttgttggtaaagcaacccctttgccctctctttccgaggaatctgaatcctttaaaacacaa |
25146096 |
T |
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| Q |
424 |
tccgacgaagaacagcgaacagcgaaaaagaaaaaggtctcaaat |
468 |
Q |
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| T |
25146097 |
tccgacgaagaacatcgaacagcgaaaaagaaaaaggtcacaaat |
25146141 |
T |
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