View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_16 (Length: 414)
Name: NF0235_2D_low_16
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 178 - 404
Target Start/End: Original strand, 44749020 - 44749246
Alignment:
| Q |
178 |
cctcttaaccttaagttaagtactttacaatggagttaaaaaataacggcctatagttgactagtagtattactttgtaattttacttgaggtctattaa |
277 |
Q |
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| T |
44749020 |
cctcttaaccttaagttaagtactttacaatggaattaaaaaataacggcctatagttgactagtagtattattttgtaattttacttgaggtttattaa |
44749119 |
T |
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| Q |
278 |
aaagaacctattcagttactttggtgaaatcagctttcagggaacattgtgattctattagcaggtttctactacaccacatttcttttagattttccta |
377 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44749120 |
aaagaacctattcagttacttttgtgaaatcagctttcagggaacattgtgattctattagcaggtttccactacaccacatttcttttagattttccta |
44749219 |
T |
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| Q |
378 |
gtgcaaaatcttgttgattcatctcag |
404 |
Q |
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| T |
44749220 |
gtgcaaaatcttgttgattcttctcag |
44749246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 44748826 - 44748964
Alignment:
| Q |
39 |
atataaaattcccctctgcacacctcttaatcttgcaaccaagaaggaaaggaacaaactggttgatcttttttctccaagtggctgacgctctacaaat |
138 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44748826 |
atataaaattctcctctgcacacctcttaatcttgcaaccaagaaggaaaggaacaaactggttgatcttttttctccaagtggctgacgctctacaaat |
44748925 |
T |
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| Q |
139 |
ttgtcttccttcttcaaatcttctcaccattgatgtgtt |
177 |
Q |
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| T |
44748926 |
ttgtcttccttcttcaaatcttctcaccgttgatgtgtt |
44748964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 289 - 397
Target Start/End: Complemental strand, 44748749 - 44748641
Alignment:
| Q |
289 |
tcagttactttggtgaaatcagctttcagggaacattgtgattctattagcaggtttctactacaccacatttcttttagattttcctagtgcaaaatct |
388 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |
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| T |
44748749 |
tcagttacttttgtgaaatcagctttcagggaacattgtgattctattagcaggtttccactacaccacatttcatttagattttcctagtgcaaaaact |
44748650 |
T |
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| Q |
389 |
tgttgattc |
397 |
Q |
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||||||||| |
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| T |
44748649 |
tgttgattc |
44748641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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