View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_18 (Length: 406)
Name: NF0235_2D_low_18
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 30370320 - 30369961
Alignment:
| Q |
21 |
atatcaacaagattactaacctttttggagctaaattttgagattctacattctgaatcatacgaggctccattttagttctattattcaacgataagat |
120 |
Q |
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| T |
30370320 |
atatcaacaagattactaacctttttggagctaaattttgagattctacattctgaatcatacgaggctccattttagttctattattcaacgataagat |
30370221 |
T |
|
| Q |
121 |
ggagattattaattgatcaatgaaatgtttatagaactaaataagctataatggtgaagtaatattttgttctttatgtaaacaataatcatgcattttg |
220 |
Q |
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| T |
30370220 |
ggagattattaattgatcaatgaaatgtttatagaactaaataagctataatggtgaagtaatattttgttctttatgtaaacaattatcatgcattttg |
30370121 |
T |
|
| Q |
221 |
taccttataactacttctatatatctcnnnnnnnnnnnattagttttatctcctcgatttcatccaaatgtcatgttcagaatacaaaaaagttttgatt |
320 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30370120 |
taccttacaactacttctatatatctc---ttttttttattagttttatctcctcgatttcatccaaatgtcatgttcagaata-aaaaaagttttgatt |
30370025 |
T |
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| Q |
321 |
aaatcattgtgtgactcttactcgcattttatatgccgtttatccctcttttggaactccatac |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30370024 |
aaatcattgtgtgactcttactcgcattttatatgccgtttatccctcttttggaactccatac |
30369961 |
T |
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