View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_19 (Length: 370)
Name: NF0235_2D_low_19
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_19 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 14003250 - 14003582
Alignment:
| Q |
12 |
cgactgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaatt |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003250 |
cgactgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtgctagccagaaagagagacttgaatt |
14003349 |
T |
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| Q |
112 |
gagggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14003350 |
gagggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaat |
14003449 |
T |
|
| Q |
212 |
gagagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatca |
311 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14003450 |
gagagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcagcacaatgatca |
14003549 |
T |
|
| Q |
312 |
ttcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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| T |
14003550 |
ttcaaaaaatcagcatattgaagatccaaatgt |
14003582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 5767555 - 5767222
Alignment:
| Q |
14 |
actgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttgtaaacaagtg---ctagccagaaagagagacttgaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| |
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| T |
5767555 |
actgagatgaagctgctgcagattggggaaaagggcagcaaacatgatgatattttgatcttctaaacaagcggcgctagccagaaagagagacttgaat |
5767456 |
T |
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| Q |
111 |
tgagggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaa |
210 |
Q |
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| T |
5767455 |
tgagggtttacaagacgatccatcagagaattaggtatggtggttccctggatatttgtgcgattcatattgatctcggtaagtgaaggacagttggtaa |
5767356 |
T |
|
| Q |
211 |
tgagagcaaagaaagtggaaactctgcgcaagcgacaattaccaaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatc |
310 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5767355 |
tgagagcaaagaaagtggaaactgtgagcaagcgacaattaccaaggttgagagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatc |
5767256 |
T |
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| Q |
311 |
attcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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| T |
5767255 |
attcaaaaaatcagtatattgaagatccaaatgt |
5767222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 19468138 - 19468066
Alignment:
| Q |
272 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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||||||||||||||||||||||| | ||||| | |||||||||||||| ||||| |||||||||||||||| |
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| T |
19468138 |
atcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgt |
19468066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 390 - 458
Alignment:
| Q |
276 |
ccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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| T |
390 |
ccaagaaacaaagacaactctgcaacatcatgatcattcataaacatggcattttgaagatccaaatgt |
458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 55908376 - 55908286
Alignment:
| Q |
254 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||| |
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| T |
55908376 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgt |
55908286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 547382 - 547454
Alignment:
| Q |
272 |
atcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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||||||||||||||||||||| ||| |||| |||| | |||||||| |||||| ||||||||| |||||| |
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| T |
547382 |
atcaccaagaaacaaagacaagtcaagaacatgttgattagtcaaaaaaacagcattttgaagatctaaatgt |
547454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 1037312 - 1037222
Alignment:
| Q |
254 |
aaggttgatagagagcagatcaccaagaaacaaagacaactcagcaacacaatgatcattcaaaaaatcagcatattgaagatccaaatgt |
344 |
Q |
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|||||| ||||| | || |||||||||||||||||||||||| || ||| |||||||||| ||| |||| |||||||||||||||| |
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| T |
1037312 |
aaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatcattcataaacgtggcattttgaagatccaaatgt |
1037222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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