View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Query
Query hiting target
Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0235_2D_low_2 (Length: 939)
Name: NF0235_2D_low_2
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0235_2D_low_2
Alignment Details
Target: chr7 (Bit Score: 773; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 65 - 930
Target Start/End: Original strand, 32239767 - 32240633
Alignment:
Q
65
aatctatacatcttacaaagcatttgcttccaattttactgtgcaattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagt
164
Q
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
T
32239767
aatctatacatcttacaaagcatttgcttccaattttactgtgcgattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcggt
32239866
T
Q
165
tttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcat
264
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32239867
tttctgtgcatggaggttttgtagctgtgttctatatctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcat
32239966
T
Q
265
agctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagag
364
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32239967
agctaggtgctacttctgtgtgctatattatggtgaaagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagaa
32240066
T
Q
365
cctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgctactctctgtgggttttctggtttctgaggatatgta
464
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
T
32240067
cctcttcaaatccaactgttccatacactaccagcgggatccgcccttcttcgcttctgctgctgctctctgtgggttttctggtttctgaggatatgta
32240166
T
Q
465
gctgggtgctacgcctgttcctttttactttcnnnnnnnnngtgtgaggtttataggcttctgcggtgctctctggggtttccactcacagagcacctat
564
Q
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32240167
gctgggtgctacgcctgttcctttttactttctttttttttgtgtgtggtttataggcttctgcggtgctctctggggtttccactcacagagcacctat
32240266
T
Q
565
aaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaatccccctgttttaatttaattttcacttggattggtt
664
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
T
32240267
aaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaacccccctgttttaatttaattttcacttggattggtt
32240366
T
Q
665
gattaaacaatgcattttatctgtcnnnnnnnncactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggt
764
Q
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32240367
gattaaacaatgcattttatctgtc-tttttttcactataaattttacttcatttgctggaaatttctggtttagggtatatgtggtttctgcaaaaggt
32240465
T
Q
765
aattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacaatgcgtgtataa
864
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
T
32240466
aattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttcttttcttttaattgattctgacactgcgtgtataa
32240565
T
Q
865
aagatgaaattcata--tgccctttttctctataaaatggtgcttgctgtgttcatttcatctcagtc
930
Q
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
T
32240566
aagatgaaattcatatgtgccctttttctctataaaatggtgcttgctgtgttcatttcatctcagtc
32240633
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 46470044 - 46470181
Alignment:
Q
64
taatctatacatcttacaaagcatttgcttccaattttactgtgcaattcacttccagcgagttccgcccttctccgcatttggcgctgatttctgtcag
163
Q
||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| | ||||||||| |||||||||| ||||||||||||| ||||||
T
46470044
taatctatacatcttacaaaggatttgcttccgattttactgtgcaattcccttccggtgagttccgctcttctccgcaattggcgctgatttatgtcag
46470143
T
Q
164
ttttctgtgcatggaggttttgtagctgtgttctatat
201
Q
|||||||||| |||||| ||||||||||||||||||||
T
46470144
ttttctgtgcttggaggctttgtagctgtgttctatat
46470181
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 33435757 - 33435811
Alignment:
Q
116
ttccagcgagttccgcccttctccgcatttggcgctgatttctgtcagttttctg
170
Q
||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
T
33435757
ttccagcgaaatccgcccttctccgcgtttggcgctgaactctgtcagttttctg
33435811
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 50164922 - 50164878
Alignment:
Q
22
ttaacacctaaagaatattttacactaaaattagtctaccgataat
67
Q
|||||||||||||||||||| |||||||||||||||||| ||||||
T
50164922
ttaacacctaaagaatattt-acactaaaattagtctactgataat
50164878
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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