View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_23 (Length: 339)
Name: NF0235_2D_low_23
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 28307214 - 28307523
Alignment:
| Q |
8 |
tgagatgaaggtgaagaaatctgattatacatgttagataatatcaattctacaaatccaaaagcaatagaaaaattaagagttttttgagatttggtgt |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28307214 |
tgagaagaaggtgaagaaatctgattatacatgttagataatatcaattctacaaatccaaaagcaatagaaaaatgaagagttttttgagatttggtgt |
28307313 |
T |
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| Q |
108 |
gtgatagaagaatcctatgagnnnnnnngaatcatttaatcaattcttgaaaagggtaaggtacaaaactacaaataaaatagagggccacttctgtagt |
207 |
Q |
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| T |
28307314 |
gtgatagaagaatcctatgagaaaaaaagaatcatttaatcaattcttgaaaagggtaaggtacaaaactacaaataaaatagagggccacttctgtagt |
28307413 |
T |
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| Q |
208 |
agttcagtagtaaaagcatgccttaaagagtgtctctatgtacttctctaggtgtgtgtttaattgnnnnnnngttggtttttgttgcatatatgcaaat |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28307414 |
agttcagtagtaaaagcatgccttaaagggtgtctctatgtacttctctaggtgtgtgtttaattgtttttttgttggtttttgttgcatatatgcaaat |
28307513 |
T |
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| Q |
308 |
atcatgtcat |
317 |
Q |
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|||||||||| |
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| T |
28307514 |
atcatgtcat |
28307523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 28371376 - 28371450
Alignment:
| Q |
237 |
gtgtctctatgtacttctctaggtgtgtgtttaattgnnnnnnngttggtttttgttgcatatatgcaaatatcatgtcataaa |
320 |
Q |
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| T |
28371376 |
gtgtctctatgtacttctctaggtgtgtgtttaattg---------ttttttttgttgcatatatgcaaatatcaagtcataaa |
28371450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 28379198 - 28379272
Alignment:
| Q |
237 |
gtgtctctatgtacttctctaggtgtgtgtttaattgnnnnnnngttggtttttgttgcatatatgcaaatatcatgtcataaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |
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| T |
28379198 |
gtgtctctatgtacttctctaggtgtgtgtttaattg---------ttttttttgttgcatatatgcaaatatcaagtcataaa |
28379272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 28387016 - 28387090
Alignment:
| Q |
237 |
gtgtctctatgtacttctctaggtgtgtgtttaattgnnnnnnngttggtttttgttgcatatatgcaaatatcatgtcataaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |
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| T |
28387016 |
gtgtctctatgtacttctctaggtgtgtgtttaattg---------ttttttttgttgcatatatgcaaatatcaagtcataaa |
28387090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 34155430 - 34155499
Alignment:
| Q |
195 |
ccacttctgtagtagttcagtagtaaaagcatgccttaaagagtgtctctatgtacttctctaggtgtgt |
264 |
Q |
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| T |
34155430 |
ccacttctgtagtagttcagtagtaaaagcatgccttaaagggtgtctctatgtacttttctaggtgtgt |
34155499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 34155564 - 34155603
Alignment:
| Q |
225 |
atgccttaaagagtgtctctatgtacttctctaggtgtgt |
264 |
Q |
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||||||||||| |||||| ||||||||||||||||||||| |
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| T |
34155564 |
atgccttaaagggtgtctttatgtacttctctaggtgtgt |
34155603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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