View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235_2D_low_26 (Length: 331)
Name: NF0235_2D_low_26
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 18430246 - 18429982
Alignment:
| Q |
16 |
ttgatagttcatactcccaaaatttaattcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaagccaaatgtttcagtacc |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18430246 |
ttgatagttgatactcccaaaatttaattcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaagccaaatgtttcagtacc |
18430147 |
T |
|
| Q |
116 |
tcttctatttcttgacaattgacattgaagaatcttctgagtgcattgattcaaatattctttaaatcaaaaactgcaaataagtgatagcttttg---- |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
18430146 |
tcttctatttcttgacaattgacattggagaatcttctgagtgcattgattcaaatattctttaaatctaaaactgcaaataagtgataggttttgcaaa |
18430047 |
T |
|
| Q |
212 |
gnnnnnnnntaaccagtcaatttaagcatgacaacattcattcattaacatacaattatctaataacaa |
280 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18430046 |
aaaaaaaaataaccaatcaatttaagcatgacaa----cattcattaacatacaattatctaataacaa |
18429982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 18430330 - 18430367
Alignment:
| Q |
289 |
aagatctctgaagtgaaaaaacatttgagaacaaatta |
326 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
18430330 |
aagatctctaaagtaaaaaaacatttgagaacaaatta |
18430367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 31022894 - 31022983
Alignment:
| Q |
34 |
aaaatttaattcaaacaatgaatctaattggccaaaccatgagagtaattgacaattaactcaagccaaatgtttcagtacctcttctatttc |
126 |
Q |
| |
|
|||||| ||||||| ||| ||||||||| || ||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
31022894 |
aaaattcaattcaagcaaagaatctaat-ggtcaaaccatgagc--aattgacaattaactcaagttaaatatttcagtacctcttcaatttc |
31022983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 31032826 - 31032888
Alignment:
| Q |
80 |
aattgacaattaactcaagccaaatgtttcagtacctcttctatttcttgacaattgacattg |
142 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
31032826 |
aattgacaattaactcaagttaaatattttagtacctctttaatttcttgacagttgacattg |
31032888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31102832 - 31102906
Alignment:
| Q |
1 |
aacatgaaatccaaattgatagttcatactcccaaaatttaattcaaacaatgaatctaattggccaaaccatga |
75 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| |||||| ||| ||| ||| ||||||| |||| ||||||||| |
|
|
| T |
31102832 |
aacatgaaatccaaatttatagttgatactcctaaaattcaatacaagcaaacaatctaaatggcgaaaccatga |
31102906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1702 times since January 2019
Visitors: 2393