View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235_2D_low_29 (Length: 308)
Name: NF0235_2D_low_29
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 299
Target Start/End: Original strand, 7278837 - 7279113
Alignment:
| Q |
23 |
ctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278837 |
ctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttga |
7278936 |
T |
|
| Q |
123 |
atttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacc |
222 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
7278937 |
atttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacc |
7279036 |
T |
|
| Q |
223 |
taagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
7279037 |
taagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7279113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 7375002 - 7374726
Alignment:
| Q |
23 |
ctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375002 |
ctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggacccaccatttga |
7374903 |
T |
|
| Q |
123 |
atttgatcaacaaattcttgcagaactatagcccttttgataatcgactttctcaagtccctaagagcagaacaatggaagactctaacagaatccaacc |
222 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
7374902 |
atttgatcaacaaattcttgaagaacaatagcccttttgataatcgactttctcaagtccctaagagcagaacaatgaaatactctaacagaatccaacc |
7374803 |
T |
|
| Q |
223 |
taagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
7374802 |
taagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttct |
7374726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 5848215 - 5848125
Alignment:
| Q |
208 |
taacagaatccaacctaagaagcaaattcatgattgtttcagcgatccttatcctctctttttgctcatttttcatcatcttcacaggttct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
5848215 |
taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctc-cttttcatcatcttcacagtttct |
5848125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2192 times since January 2019
Visitors: 2399