View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_33 (Length: 265)
Name: NF0235_2D_low_33
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8066286 - 8066537
Alignment:
| Q |
1 |
aggtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccct |
100 |
Q |
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| T |
8066286 |
aggtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccct |
8066385 |
T |
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| Q |
101 |
caaaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcat |
200 |
Q |
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| T |
8066386 |
caaaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcat |
8066485 |
T |
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| Q |
201 |
gaaatcccataatgtagtatcgaagattgtgagatcctccttagatgtccat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8066486 |
gaaatcccataatgtagtatcgaagattgtgagatcctccttagatgtccat |
8066537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8074721 - 8074972
Alignment:
| Q |
1 |
aggtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
8074721 |
aggtcgaacactatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccct |
8074820 |
T |
|
| Q |
101 |
caaaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcat |
200 |
Q |
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| T |
8074821 |
caaaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaataacttggaatgagtcggattttgtaaaat |
8074920 |
T |
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| Q |
201 |
gaaatcccataatgtagtatcgaagattgtgagatcctccttagatgtccat |
252 |
Q |
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||||||||||||| ||| || ||||||||||| |||||| | ||||||||| |
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| T |
8074921 |
taaatcccataatggagtctcaaagattgtgaggtcctccattgatgtccat |
8074972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 34951317 - 34951375
Alignment:
| Q |
28 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
86 |
Q |
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| T |
34951317 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34951375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 34946846 - 34946904
Alignment:
| Q |
28 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
86 |
Q |
| |
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|||||||||||| | ||||| ||| | |||||||| |||||||| |||||||||||||| |
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| T |
34946846 |
ggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34946904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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