View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235_2D_low_43 (Length: 234)

Name: NF0235_2D_low_43
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235_2D_low_43
NF0235_2D_low_43
[»] chr4 (3 HSPs)
chr4 (83-226)||(53790586-53790732)
chr4 (90-131)||(10482312-10482353)
chr4 (180-233)||(53774866-53774919)
[»] chr7 (8 HSPs)
chr7 (90-233)||(19344473-19344619)
chr7 (90-233)||(19374782-19374928)
chr7 (100-233)||(19325887-19326029)
chr7 (178-233)||(12819905-12819960)
chr7 (178-218)||(29430990-29431030)
chr7 (178-233)||(14076704-14076759)
chr7 (178-233)||(14386732-14386787)
chr7 (178-227)||(660836-660885)
[»] chr6 (4 HSPs)
chr6 (106-233)||(24254340-24254470)
chr6 (178-233)||(17369690-17369745)
chr6 (191-233)||(6921352-6921394)
chr6 (191-233)||(6947882-6947924)
[»] chr5 (3 HSPs)
chr5 (171-233)||(29597534-29597596)
chr5 (181-226)||(29642392-29642437)
chr5 (181-226)||(29647709-29647754)
[»] chr2 (3 HSPs)
chr2 (177-218)||(18908797-18908838)
chr2 (177-218)||(18913545-18913586)
chr2 (177-218)||(18920753-18920794)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 83 - 226
Target Start/End: Complemental strand, 53790732 - 53790586
Alignment:
Q  83 gagagcctgcctatatcagtgtatcaccattcttagaaagacacaatgggaacataaat---tgataattactccagtcactaaacctagcatctacatg 179  Q
    |||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||   ||||| | | |||||||||||||  ||  |||||| ||    
T  53790732 gagagcttgccaatatcagtgtctcaccattctcagaaagacacaatgggaacataaatgtctgatactgattccagtcactaaaattattatctacttg 53790633  T
Q  180 aagattctgaaaactaattttaaggaattgggtccaagattgttcaa 226  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  53790632 aagattctgaaaactaattttaagaaattgagtccaagattgttcaa 53790586  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 10482353 - 10482312
Alignment:
Q  90 tgcctatatcagtgtatcaccattcttagaaagacacaatgg 131  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  10482353 tgccaatattagtgtatcaccattcttagaaagacacaatgg 10482312  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 53774919 - 53774866
Alignment:
Q  180 aagattctgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||||||||| ||||||||||||||||||| |||||||| | |||||| |||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaa 53774866  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 19344473 - 19344619
Alignment:
Q  90 tgcctatatcagtgtatcaccattcttagaaagacacaatgggaacataaatt---gataattactccagtcactaaacctagcatctacatgaagattc 186  Q
    |||| ||| ||||||||||||||| |||||||| |||||||| |||||||| |   || ||| | ||| ||||||||||||| ||||  |  ||||||||    
T  19344473 tgccaatagcagtgtatcaccatttttagaaagccacaatggaaacataaaatatggacaataaatccggtcactaaacctatcatcccctagaagattc 19344572  T
Q  187 tgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  19344573 tgaaaactaattttaagaaattgagtccaagattgttcaactccaaa 19344619  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 19374928 - 19374782
Alignment:
Q  90 tgcctatatcagtgtatcaccattcttagaaagacacaatgggaacataaa---ttgataattactccagtcactaaacctagcatctacatgaagattc 186  Q
    |||| ||| ||||||||||||||| |||||||| |||||||| ||||||||   |||||||| | ||| ||||||||||||| |||| ||   |||||||    
T  19374928 tgccaatagcagtgtatcaccatttttagaaagccacaatggaaacataaaacattgataataaatccggtcactaaacctatcatccactaaaagattc 19374829  T
Q  187 tgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |  |||||||||||||| ||||| ||||||||  ||||||| |||||    
T  19374828 tttaaactaattttaagaaattgagtccaagaccgttcaactccaaa 19374782  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 19325887 - 19326029
Alignment:
Q  100 agtgtatcaccattcttagaaagacacaatgggaacataa---attgataattactccagtcactaaacctag------catctacatgaagattctgaa 190  Q
    |||||||||| ||||| |||||||||||||||||||||||   ||||||||| |  |||||| |||||||||       ||||||| |||| ||||||||    
T  19325887 agtgtatcactattctcagaaagacacaatgggaacataagcgattgataatgaaaccagtcgctaaacctaaacctatcatctacttgaacattctgaa 19325986  T
Q  191 aactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||| ||||| | |||||| |||||||||||||| || |||||    
T  19325987 aactgattttgatgaattgagtccaagattgttctactccaaa 19326029  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 12819905 - 12819960
Alignment:
Q  178 tgaagattctgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||||||| |||||    
T  12819905 tgaagattctgacaactgattttaaggaattgagtccaggattgttcaactccaaa 12819960  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 29430990 - 29431030
Alignment:
Q  178 tgaagattctgaaaactaattttaaggaattgggtccaaga 218  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  29430990 tgaagatcctgataactaattttaaggaattgggtccaaga 29431030  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 14076759 - 14076704
Alignment:
Q  178 tgaagattctgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||||||||||| ||||||||||||| ||||| |||||||| | |||||| |||||    
T  14076759 tgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaa 14076704  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 14386787 - 14386732
Alignment:
Q  178 tgaagattctgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||||||||||| ||||||||||||| ||||| |||||||| | |||||| |||||    
T  14386787 tgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaa 14386732  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 660836 - 660885
Alignment:
Q  178 tgaagattctgaaaactaattttaaggaattgggtccaagattgttcaac 227  Q
    |||||||| ||| ||||||||||||||||||| |||||||| | ||||||    
T  660836 tgaagattatgataactaattttaaggaattgagtccaagactcttcaac 660885  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 24254340 - 24254470
Alignment:
Q  106 tcaccattcttagaaagacacaatgggaacataaa---ttgataattactccagtcactaaacctagcatctacatgaagattctgaaaactaattttaa 202  Q
    |||||||||| ||||||||||||||||||||||||   |||||||  | ||||||||||||||||| ||||||| |||| ||||| |||||| ||||| |    
T  24254340 tcaccattctcagaaagacacaatgggaacataaacgattgataacgattccagtcactaaacctatcatctacttgaacattctcaaaactgattttga 24254439  T
Q  203 ggaattgggtccaagattgttcaacaccaaa 233  Q
     |||||| |||||||||||||| || |||||    
T  24254440 tgaattgagtccaagattgttcgactccaaa 24254470  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 17369745 - 17369690
Alignment:
Q  178 tgaagattctgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||||||||||| ||||||||||||| ||||| |||||||| | |||||| |||||    
T  17369745 tgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaa 17369690  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 6921352 - 6921394
Alignment:
Q  191 aactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    ||||||||||||||||||| |||||||||| |||||| |||||    
T  6921352 aactaattttaaggaattgagtccaagattcttcaactccaaa 6921394  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 6947882 - 6947924
Alignment:
Q  191 aactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    ||||||||||||||||||| |||||||||| |||||| |||||    
T  6947882 aactaattttaaggaattgagtccaagattcttcaactccaaa 6947924  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 29597534 - 29597596
Alignment:
Q  171 atctacatgaagattctgaaaactaattttaaggaattgggtccaagattgttcaacaccaaa 233  Q
    |||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  29597534 atctacctgtagattttgaaaactaattttaaggaattgagtccaagattgttcaactccaaa 29597596  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 29642437 - 29642392
Alignment:
Q  181 agattctgaaaactaattttaaggaattgggtccaagattgttcaa 226  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  29642437 agattctgaaaactaattttaaggaattgagtccaagattgttcaa 29642392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 29647754 - 29647709
Alignment:
Q  181 agattctgaaaactaattttaaggaattgggtccaagattgttcaa 226  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  29647754 agattttgaaaactaattttaaggaattgagtccaagattgttcaa 29647709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 18908797 - 18908838
Alignment:
Q  177 atgaagattctgaaaactaattttaaggaattgggtccaaga 218  Q
    ||||||||| |||||||||||||| |||||||| ||||||||    
T  18908797 atgaagattttgaaaactaattttgaggaattgagtccaaga 18908838  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 18913545 - 18913586
Alignment:
Q  177 atgaagattctgaaaactaattttaaggaattgggtccaaga 218  Q
    ||||||||| |||||||||||||| |||||||| ||||||||    
T  18913545 atgaagattttgaaaactaattttgaggaattgagtccaaga 18913586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 18920753 - 18920794
Alignment:
Q  177 atgaagattctgaaaactaattttaaggaattgggtccaaga 218  Q
    ||||||||| |||||||||||||| |||||||| ||||||||    
T  18920753 atgaagattttgaaaactaattttgaggaattgagtccaaga 18920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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