View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_47 (Length: 226)
Name: NF0235_2D_low_47
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 25146339 - 25146185
Alignment:
| Q |
4 |
agatggacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
103 |
Q |
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| T |
25146339 |
agatgaacatcatcatcaactctcttattagggcaaacagttattctaattatacaaaacctataataagaaactaggcaccaaaggtgattggtaggtt |
25146240 |
T |
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| Q |
104 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgagg |
158 |
Q |
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| T |
25146239 |
gcttcagccagctgactccaagaaaggttccaggtttggttgctgaattccgagg |
25146185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 25146066 - 25146141
Alignment:
| Q |
151 |
ttccgaggaatctgaatcctttaaaacacaatccgacgaagaacagcgaacagcgaaaaagaaaaaggtctcaaat |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
25146066 |
ttccgaggaatctgaatcctttaaaacacaatccgacgaagaacatcgaacagcgaaaaagaaaaaggtcacaaat |
25146141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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