View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_57 (Length: 215)
Name: NF0235_2D_low_57
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 37318369 - 37318479
Alignment:
| Q |
1 |
ggatttgtacactttgagagagaga--aaaaatttacatgaatttgaaccggacaaaattagattttaatcactatgtttggaaactaatcctcatgaca |
98 |
Q |
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| T |
37318369 |
ggatttgtacactttgagagagagagaaaaaatttacatga-tttgaaccggacaaaattagattttaatcactatgtttggaaactaatcctcatgaca |
37318467 |
T |
|
| Q |
99 |
gactcaacaacc |
110 |
Q |
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| T |
37318468 |
gactcaacaacc |
37318479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 37318302 - 37318208
Alignment:
| Q |
103 |
caacaacccatattttgcccccacaaataacctccttatctttctccttcatgtgactccccaactccaattccccctcccttgctggccactac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37318302 |
caacaacccatattttgcccccacaaataacctccttatctttctccttcatgtgactccccaactccaattcctcctcccttgctggccactac |
37318208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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