View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_60 (Length: 207)
Name: NF0235_2D_low_60
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 29105029 - 29104846
Alignment:
| Q |
1 |
agtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaaaacctaatgca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29105029 |
agtatattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgctcaaaacctaatgca |
29104930 |
T |
|
| Q |
101 |
aatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgcttagacgctgaatccttctctgt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29104929 |
aatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcctgcttagacgctgaatccttctctgt |
29104846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 29090768 - 29090588
Alignment:
| Q |
1 |
agtatattcaccacgttcaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccgaaactcatccatgcacaaaacctaatgca |
100 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
29090768 |
agtacattcaccacgttaaccaacttcaaagagccatgcactcgttactcgagctcgaaccatcgtctccagaactcatccacgcacaaaacctaatgca |
29090669 |
T |
|
| Q |
101 |
aatcgctatgaagaggctccaaaaagagttttaccagatattaaccatgaaccaggcttgcttagacgctgaatccttctc |
181 |
Q |
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||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||| | ||||||| ||||||||||||| |
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| T |
29090668 |
aattgctatgaagaggctccaaaaagaattctaccagatcttaaccatgaaccaggcatacttagactctgaatccttctc |
29090588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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