View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_8 (Length: 512)
Name: NF0235_2D_low_8
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 454
Target Start/End: Original strand, 18429423 - 18429879
Alignment:
| Q |
8 |
tgagatggacatcatagttatacttaaaattaagtatgacgataattacactaaatgcgtgtaaatcggaagtctttcatcgtggatttatggctgcaag |
107 |
Q |
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|||| ||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18429423 |
tgagctggacataatagtaatacttaaaattaagtatgtcgaaaattacactaaatgcgtgtaaattggaagtctttcatcgtggatttatggctgcaag |
18429522 |
T |
|
| Q |
108 |
gttaagatgagatgttatagttggaacctttttcattttaccatccttttcgtttttcaggtcattgcagagagcttatctgaagaagaattagctgg-- |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18429523 |
gttaagatgagatgttatagtttgaacctttttcattttaccatccttttcgtttttcaggtcgttgcagagagcttatctgaagaagaattagctggat |
18429622 |
T |
|
| Q |
206 |
-tcaagaaatgttcaagatgatataatctggtcattgcagagatcatataatctggtcctcacatttccttcacaaattatatgaatggacgtagtgtag |
304 |
Q |
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| T |
18429623 |
taaaagaaatgttcaagatgatataatatggtcattgcagagatcatataatctggtcctcacatttccttcacaaattatatgaatggacgtagtgtag |
18429722 |
T |
|
| Q |
305 |
gtgtttgaaatctcaaatcgagtagga-------tttgcgcatacaacaggtttaaatcatgatcacgattcttgatattgtagagaattacgtccaatt |
397 |
Q |
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| T |
18429723 |
gtgtttgaaatctcaaatcgagtaggatatgcgctgtgcgcatacaacaggtttaaatcatgatcacgattcttgatattgtagagaattacgtccaatt |
18429822 |
T |
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| Q |
398 |
gtagctgatgtgaccccagatcaacgtgcagacctgtttgtgaaacccgagcgcata |
454 |
Q |
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| T |
18429823 |
gtagctgatgtgaccccagatcaacgtgtggacctgtttgtgaaacccgagcgcata |
18429879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 60 - 227
Target Start/End: Original strand, 18402024 - 18402195
Alignment:
| Q |
60 |
aaatgcgtgtaaatcggaagtctttcatcgtggatttatggctgcaaggttaagatgagatgttatagttggaacc-tttttcattttaccatccttttc |
158 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |
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| T |
18402024 |
aaatgcgtgtaaatcggaagtctttcatcgtggatttctggctgcaaggttaagatgagatgttatagtttgaaccttttttcattttaccatcctttgc |
18402123 |
T |
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| Q |
159 |
gtttttcaggtcattgcagagagcttatctgaagaagaattagctgg---tcaagaaatgttcaagatgata |
227 |
Q |
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| T |
18402124 |
gtttttcaggtcattgcagagagcttatctgaagaagaattggctggattaaaagaaatgttcaagatgata |
18402195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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