View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_2D_low_9 (Length: 509)
Name: NF0235_2D_low_9
Description: NF0235_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_2D_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 24531075 - 24530586
Alignment:
| Q |
1 |
taaactcatagctgaaaagggtcacaaaatatcattcatttccacacctagaaacatcaaacgtctccctaaactacctccaaatttacaacctttggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24531075 |
taaactcatagctgaaaagggtcacaaaatatcattcatttccacacctagaaacatcaaacgtctccctaagctacctccaaatttacaacctttggta |
24530976 |
T |
|
| Q |
101 |
aattttgtagaactctcactaccttatatagaccaactacctgagcatgccgaagctactatggacattccatcacacattgttccatatctcaagaaag |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24530975 |
aattttgtagaactctcactacctcatatagaccaactacctgagcatgccgaagctactatggacattccatcacaccttgttccatatctcaagaaag |
24530876 |
T |
|
| Q |
201 |
cttttgatggtcttcaacaacctttgatagaatttttggaaatatccaaccctaattgtgtcatatatgactttgcaccttattggttaccaccaatatt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24530875 |
cttttgatggtcttcaacaacctttgattgaatttttggaaaaatccaaccctgattgtgtcatatatgactttgcaccttattggttatcaccaatatt |
24530776 |
T |
|
| Q |
301 |
atcaaagtttggcatcttaagcattttcttctcaatttttactgcatttggtatgtgttttggagtgaaagtcatggttggaaagtcaaatgatgaggag |
400 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24530775 |
atcgaagtttggcatcttaagcattttcttctcaatttttactgcatttggcatgtgttttggagtgaaagtcatggttggaaagtcaaatgatgaggac |
24530676 |
T |
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| Q |
401 |
aatattatttctgctggctacttagaacaaaatgaatctggagttacagatgtgttcagggtcaaagaaactctttttggtgctgatttt |
490 |
Q |
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| T |
24530675 |
aatattatttctgctgactacttagaacaaaatgaatctggagttacagatgtgttcagggtcaaagaaactctttttggtgctgatttt |
24530586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 2 - 490
Target Start/End: Original strand, 24542809 - 24543297
Alignment:
| Q |
2 |
aaactcatagctgaaaagggtcacaaaatatcattcatttccacacctagaaacatcaaacgtctccctaaactacctccaaatttacaacctttggtaa |
101 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24542809 |
aaactcatagctcaaaagggtcacaaaatttcattcatttccacacctagaaacattgaacgtctccctaaactaccttcaaatttacaacctttggtaa |
24542908 |
T |
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| Q |
102 |
attttgtagaactctcactaccttatatagaccaactacctgagcatgccgaagctactatggacattccatcacacattgttccatatctcaagaaagc |
201 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
24542909 |
attttgtagaactctcactacctcatatagaccaactacctgaacatgcagaagctactatggacattccatcacacattggttcatatctcaagaaagc |
24543008 |
T |
|
| Q |
202 |
ttttgatggtcttcaacaacctttgatagaatttttggaaatatccaaccctaattgtgtcatatatgactttgcaccttattggttaccaccaatatta |
301 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24543009 |
ttttgatggtcttcaacaacctttggtcgaatttttggaaaaatccaaccctgattgtgtcatatatgactttgcaccttattggttaccaccagtatta |
24543108 |
T |
|
| Q |
302 |
tcaaagtttggcatcttaagcattttcttctcaatttttactgcatttggtatgtgttttggagtgaaagtcatggttggaaagtcaaatgatgaggaga |
401 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| |||||||||| || || | ||||||||||||||||||||||||| |
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| T |
24543109 |
tcaaagtttggcatcttaagcatttatttctcaatatttagtgcaattggtatgtcttttggagtggaattcttagttggaaagtcaaatgatgaggaga |
24543208 |
T |
|
| Q |
402 |
atattatttctgctggctacttagaacaaaatgaatctggagttacagatgtgttcagggtcaaagaaactctttttggtgctgatttt |
490 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||||||| |
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| T |
24543209 |
atattatttctgatgtctacttagaacaaaatgaatctggagttacagatatgtttagggtcaaaaaaatcctttttggtgctgatttt |
24543297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 1722067 - 1722146
Alignment:
| Q |
10 |
agctgaaaagggtcacaaaatatcattcatttccacacctagaaacatcaaacgtctccctaaactacctccaaatttac |
89 |
Q |
| |
|
|||| |||||||| ||||| | || ||||||||||||||||||||||| ||| | ||| |||||||||||| |||||||| |
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| T |
1722067 |
agctcaaaagggtaacaaagtttccttcatttccacacctagaaacattaaatgcctctctaaactacctcaaaatttac |
1722146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 1722223 - 1722280
Alignment:
| Q |
262 |
catatatgactttgcaccttattggttaccaccaatattatcaaagtttggcatctta |
319 |
Q |
| |
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|||||||||||| ||||||| ||| ||||||||||||| ||| || ||||||||||| |
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| T |
1722223 |
catatatgacttcgcaccttgttgtttaccaccaatatcatctaaacttggcatctta |
1722280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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