View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_high_14 (Length: 358)
Name: NF0235_high_14
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 53 - 336
Target Start/End: Complemental strand, 13472295 - 13472012
Alignment:
| Q |
53 |
attcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttaggagacgccatattagttataggtcatattccaatcgccagcatgtt |
152 |
Q |
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| T |
13472295 |
attcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttagaagacgccaaattagttataggtcctattccaatcaccagcatgtt |
13472196 |
T |
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| Q |
153 |
tcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataggacctataactactatcgcgtctactacttaatgtggag |
252 |
Q |
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| T |
13472195 |
tcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataagacctataactattgtcgcatctactacttaatgtggag |
13472096 |
T |
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| Q |
253 |
agtagtctgttttggcacattgatctccacaaaaatttgaactgactgatagggtttgaaaatagcaattgtcaatggtctctg |
336 |
Q |
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| T |
13472095 |
agtagtctgttttggcacattgatctccacaaaaatttgaactgactgataggatttgaaaatagcaattgtcaatggtatctg |
13472012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 53 - 327
Target Start/End: Complemental strand, 13468196 - 13467924
Alignment:
| Q |
53 |
attcttctttctctggagatcaatgcgccaaaacaaactatgctccacatttaggagacgccatattagttataggtcatattccaatcgccagcatgtt |
152 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||| || ||||| || |||||||||| ||| ||||| ||| |||||| |
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| T |
13468196 |
attcttctttctctggagatcaatgtgccaaaacagactatgctccacattcagaagacgtca-attagttatatgtcctattctgatcattgccatgtt |
13468098 |
T |
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| Q |
153 |
tcaaggaaaaaatgtttgaaaatggaatagacgctgcagtgaaggccaacaatgagaataggacctataactactatcgcgtctactacttaatgtggag |
252 |
Q |
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| T |
13468097 |
tcaaggaaacaatgtttgaaaatggaatagacgtggcaatgaaggcccgctatgagaataggacctataacta-tgtggcatctactaccgaatatgaag |
13467999 |
T |
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| Q |
253 |
agtagtctgttttggcacattgatctccacaaaaatttgaactgactgatagggtttgaaaatagcaattgtcaa |
327 |
Q |
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| T |
13467998 |
cttagtctgttttggcacattgatctccacataaatatgaactgactgatatggtttgaaaatagcaattgtcaa |
13467924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 13468146 - 13468183
Alignment:
| Q |
244 |
aatgtggagagtagtctgttttggcacattgatctcca |
281 |
Q |
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| T |
13468146 |
aatgtggagcatagtctgttttggcacattgatctcca |
13468183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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