View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0235_high_25 (Length: 211)
Name: NF0235_high_25
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0235_high_25
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29104898 - 29105039
Alignment:
Q
1
aaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggc
100
Q
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
29104898
aaaactctttttggagcctcttcatagcgatttgcattaggttttgagcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggc
29104997
T
Q
101
tctttgaagttggtgaacgtggtgaatatactgaatggcttc
142
Q
|||||||||||||| |||||||||||||||||||||||||||
T
29104998
tctttgaagttggttaacgtggtgaatatactgaatggcttc
29105039
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 6 - 143
Target Start/End: Original strand, 29090642 - 29090779
Alignment:
Q
6
tctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctcttt
105
Q
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
T
29090642
tctttttggagcctcttcatagcaatttgcattaggttttgtgcgtggatgagttctggagacgatggttcgagctcgagtaacgagtgcatggctcttt
29090741
T
Q
106
gaagttggtgaacgtggtgaatatactgaatggcttca
143
Q
||||||||| |||||||||||| |||||||||||||||
T
29090742
gaagttggttaacgtggtgaatgtactgaatggcttca
29090779
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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