View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_low_11 (Length: 434)
Name: NF0235_low_11
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 70 - 426
Target Start/End: Original strand, 4032979 - 4033336
Alignment:
| Q |
70 |
ttcttttctttaccccacataaa-taatactcctccgtagcagacttattaaagctagtactacaacagagcccaagcaacaacaacgtagtcaaacacg |
168 |
Q |
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||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4032979 |
ttcttttctttactccacaaaaaataatactcctccgtagcagacttattaaagctagtactacaacagagcccaagcaacaacaacgtagtcaaacacg |
4033078 |
T |
|
| Q |
169 |
ccaacaagaccatnnnnnnnnnnnntataagcccattttctcaaggtggcccaatttcacctgttccctgctactcagacaccattccacgtgggagtct |
268 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033079 |
ccaacaagaccataaaaaagaaaaaaataagcccattttctcaaggtggcccaatttcacctgttccctgctactcagacaccattccacgtgggagtct |
4033178 |
T |
|
| Q |
269 |
ctctccctgcactaacctaaccccacatattaccctatccaatcatatttatccacctcatctcacctttctctttcattacgtcaactcaaattcccat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4033179 |
ctctccctgcactaacctaaccccacatattaccctatccaatcatatttatccacctcatctcacctttctctttcattaccacaactcaaattcccat |
4033278 |
T |
|
| Q |
369 |
aaaacctctttatttattacaaactccccctccaatccaataaaccactattcatctc |
426 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033279 |
aatacctctttatttattacaaactccccctccaatccaataaaccactattcatctc |
4033336 |
T |
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