View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_low_23 (Length: 354)
Name: NF0235_low_23
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 33 - 342
Target Start/End: Complemental strand, 28307523 - 28307214
Alignment:
| Q |
33 |
atgacatgatatttgcatatatgcaacaaaaaccaacnnnnnnncaattaaacacacacctagagaagtacatagagacactctttaaggcatgctttta |
132 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28307523 |
atgacatgatatttgcatatatgcaacaaaaaccaacaaaaaaacaattaaacacacacctagagaagtacatagagacaccctttaaggcatgctttta |
28307424 |
T |
|
| Q |
133 |
ctactgaactactacagaagtggccctctattttatttgtagttttgtaccttacccttttcaagaattgattaaatgattcnnnnnnnctcataggatt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28307423 |
ctactgaactactacagaagtggccctctattttatttgtagttttgtaccttacccttttcaagaattgattaaatgattctttttttctcataggatt |
28307324 |
T |
|
| Q |
233 |
cttctatcacacaccaaatctcaaaaaactcttaatttttctattgcttttggatttgtagaattgatattatctaacatgtataatcagatttcttcac |
332 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28307323 |
cttctatcacacaccaaatctcaaaaaactcttcatttttctattgcttttggatttgtagaattgatattatctaacatgtataatcagatttcttcac |
28307224 |
T |
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| Q |
333 |
cttcatctca |
342 |
Q |
| |
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|||| ||||| |
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| T |
28307223 |
cttcttctca |
28307214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 28371450 - 28371376
Alignment:
| Q |
30 |
tttatgacatgatatttgcatatatgcaacaaaaaccaacnnnnnnncaattaaacacacacctagagaagtacatagagacac |
113 |
Q |
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|||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
28371450 |
tttatgacttgatatttgcatatatgcaacaaaaaaaa---------caattaaacacacacctagagaagtacatagagacac |
28371376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 28379272 - 28379198
Alignment:
| Q |
30 |
tttatgacatgatatttgcatatatgcaacaaaaaccaacnnnnnnncaattaaacacacacctagagaagtacatagagacac |
113 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
28379272 |
tttatgacttgatatttgcatatatgcaacaaaaaaaa---------caattaaacacacacctagagaagtacatagagacac |
28379198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 28387090 - 28387016
Alignment:
| Q |
30 |
tttatgacatgatatttgcatatatgcaacaaaaaccaacnnnnnnncaattaaacacacacctagagaagtacatagagacac |
113 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
28387090 |
tttatgacttgatatttgcatatatgcaacaaaaaaaa---------caattaaacacacacctagagaagtacatagagacac |
28387016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 34155499 - 34155430
Alignment:
| Q |
86 |
acacacctagagaagtacatagagacactctttaaggcatgcttttactactgaactactacagaagtgg |
155 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34155499 |
acacacctagaaaagtacatagagacaccctttaaggcatgcttttactactgaactactacagaagtgg |
34155430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 34155603 - 34155564
Alignment:
| Q |
86 |
acacacctagagaagtacatagagacactctttaaggcat |
125 |
Q |
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||||||||||||||||||||| |||||| ||||||||||| |
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| T |
34155603 |
acacacctagagaagtacataaagacaccctttaaggcat |
34155564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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