View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_low_27 (Length: 285)
Name: NF0235_low_27
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 29007318 - 29007574
Alignment:
| Q |
1 |
acacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggag |
100 |
Q |
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| T |
29007318 |
acacccaaacgaccctcatctgcacaagaacaatcacaaggcgctttagcatgtgcatctggaggactaggaggagaatcactgtgtggtggactaggag |
29007417 |
T |
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| Q |
101 |
gagaatcaccattcggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgac |
200 |
Q |
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| T |
29007418 |
gagaatcaccattcggtggactaggaggagaatgagggcgtggtgcagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgac |
29007517 |
T |
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| Q |
201 |
ttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgt |
257 |
Q |
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| T |
29007518 |
ttcaagtttgaggccttgttgacaatgacccattctgccacaaacgaagtagcgtgt |
29007574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 21465563 - 21465429
Alignment:
| Q |
115 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
214 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21465563 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggaggagaagttccagtgttgttggactgagcttgaactttgactttgagtttcaggc |
21465464 |
T |
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| Q |
215 |
cttgttgacaatgacccattctgccacaaacgaag |
249 |
Q |
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| T |
21465463 |
cttgttggcaatggcccattctgccacaaacgaag |
21465429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 21409776 - 21409647
Alignment:
| Q |
115 |
ggtggactaggaggagaatgagggcgtggtggagaactaggtggaggagaagttccagtgttgttggactgagcttgaactttgacttcaagtttgaggc |
214 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
21409776 |
ggtggactaggaggagaatgagggcatggtggagaaataggtggagg-----------tgttgttggactgagcttgaactttgactttgagtttcaggc |
21409688 |
T |
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| Q |
215 |
cttgttgacaatgacccattctgccacaaacgaagtagcgt |
255 |
Q |
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| T |
21409687 |
cttgttggcaatggcccattctgccacaaacgaagtagcgt |
21409647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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