View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_low_28 (Length: 272)
Name: NF0235_low_28
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_low_28 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 34337367 - 34337130
Alignment:
| Q |
25 |
catcactctttagctgaaaagaaaagataatatgactataccatcgaattaaagaaaataataacagtgaaatgatagataacatgtatatgatgttcct |
124 |
Q |
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| T |
34337367 |
catcactctttagctgaaaagaaaagataatatgactataccatcgaattaaagaaaataataacagtgaaatgatagataacatgtatatgatgttcct |
34337268 |
T |
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| Q |
125 |
gttgaaccgtgtgcagaaagttagcattcagaagaaatatgtctatannnnnnnaatggccaataatagtagttagttgctatttttgttagagggggaa |
224 |
Q |
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| T |
34337267 |
gttgaaccgtgtgcagaaagttagcattcagaagaaatatgtctatatttttttaatggccaataatagtagttagttgctatttttgttagagggggaa |
34337168 |
T |
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| Q |
225 |
gttgaacccatgaccttcttatcactctaatccctatg |
262 |
Q |
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| T |
34337167 |
gttgaacccatgaccttcttatcactctaatccctatg |
34337130 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 16244683 - 16244624
Alignment:
| Q |
191 |
tagtagttagttgctatttttgttagagggggaagttgaacccatgaccttcttatcact |
250 |
Q |
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| T |
16244683 |
tagtagttagttattatttttgttagagaggggagttgaacccatgacctctttatcact |
16244624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 41774572 - 41774489
Alignment:
| Q |
179 |
aatggccaataatagtagttagttgctatttttgttagagggggaagttgaacccatgaccttcttatcactctaatccctatg |
262 |
Q |
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| T |
41774572 |
aatggccaatgttagtagtcagttgttatttttgttggagggaggagttgaacccatggcctccttatctcttcaatccctatg |
41774489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 15482632 - 15482672
Alignment:
| Q |
205 |
tatttttgttagagggggaagttgaacccatgaccttctta |
245 |
Q |
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| T |
15482632 |
tatttttgttagaggggggagttgaacccatgacctcctta |
15482672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 40270933 - 40270892
Alignment:
| Q |
196 |
gttagttgctatttttgttagagggggaagttgaacccatga |
237 |
Q |
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| T |
40270933 |
gttagtagttatttttgttagagggggtagttgaacccatga |
40270892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 15323 - 15287
Alignment:
| Q |
215 |
agagggggaagttgaacccatgaccttcttatcactc |
251 |
Q |
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| T |
15323 |
agaggggtaagttgaacccatgactttcttatcactc |
15287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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