View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235_low_3 (Length: 627)

Name: NF0235_low_3
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235_low_3
NF0235_low_3
[»] chr6 (15 HSPs)
chr6 (89-619)||(5725121-5725651)
chr6 (97-619)||(4370058-4370580)
chr6 (193-619)||(4365754-4366186)
chr6 (411-615)||(4414147-4414352)
chr6 (113-262)||(4414493-4414641)
chr6 (97-257)||(4377214-4377374)
chr6 (374-551)||(4360539-4360716)
chr6 (104-346)||(4360269-4360514)
chr6 (101-257)||(4384791-4384947)
chr6 (442-614)||(4390245-4390417)
chr6 (97-257)||(4389899-4390057)
chr6 (442-614)||(4377562-4377734)
chr6 (442-614)||(4385132-4385304)
chr6 (114-150)||(4365675-4365711)
chr6 (199-251)||(21031588-21031640)
[»] chr8 (1 HSPs)
chr8 (205-257)||(15658701-15658753)


Alignment Details
Target: chr6 (Bit Score: 519; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 89 - 619
Target Start/End: Complemental strand, 5725651 - 5725121
Alignment:
89 cttttagtatcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
5725651 cttttagtatcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagtatgttgc 5725552  T
189 actgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaacttatatcagctgat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5725551 actgtccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaacttatatcagctgat 5725452  T
289 tcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctcatcataccagtcatcgaccattatgg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5725451 tcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctcatcataccagtcatcgaccattatgg 5725352  T
389 tgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaaga 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5725351 tgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaaga 5725252  T
489 cggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5725251 cggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaa 5725152  T
589 aaccttgcaatagctcgacatgcttcatctc 619  Q
    ||||||||||||||| |||||||||| ||||    
5725151 aaccttgcaatagcttgacatgcttcttctc 5725121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 97 - 619
Target Start/End: Original strand, 4370058 - 4370580
Alignment:
97 atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgcactgtccg 196  Q
    ||||||| ||||||   |||||||||||| |||||||||| |||||| ||||||| |||||||||||||||| |   |    || ||| || | ||||||    
4370058 atcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccg 4370157  T
197 tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaactt-----atatcagctgattca 291  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||  ||||  |||  ||| ||||  ||||| ||  ||     ||||||| ||  |||    
4370158 tcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcga--ttccaacatatcagttgcatca 4370255  T
292 acagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttct-catcataccagtcatcgaccattatggtg 390  Q
    | ||||||||||||||||||||| ||||||||||| || || ||||||| ||||  ||||  |||  ||| | |||  | |  |||| ||||||||||||    
4370256 atagacttcaaaaagaatgttccgtttggactgttcactaacaagtttattatggtccta--ctc--tctgcgtcaaccgatccatcaaccattatggtg 4370351  T
391 caacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacg 490  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||  |||| |||| ||||||||||||||||||||||||| ||||||||||  ||||||    
4370352 caacctgttaccttccacatagctctatgttcttccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcataagacg 4370451  T
491 gtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaa 590  Q
    |||||||||| ||| | || ||| ||||||||| |||| |||||||  ||||||||||||||| | ||||  ||| | ||||| ||||||||||||||||    
4370452 gtggcttaaatccttcgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctgtgccgctgcaaacggtatggcattgttgtagaaaaa 4370551  T
591 ccttgcaatagctcgacatgcttcatctc 619  Q
    ||||||||| ||| |||||||||| ||||    
4370552 ccttgcaatcgcttgacatgcttcctctc 4370580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 193 - 619
Target Start/End: Original strand, 4365754 - 4366186
Alignment:
193 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaactt-----atatcagctga 287  Q
    ||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||  ||||| ||  ||     |||||||  |     
4365754 tccgtcacaatgtggacagcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcga--ttccaacatatcagacgc 4365851  T
288 ttcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgtccctaaactccttctca---tcataccagtcatcgaccatt 384  Q
     |||| ||||||||||||||||||||||||||||||||| || ||  |||||||||||  ||||  |||| | |||   |||  | |  |||| ||||||    
4365852 atcaatagacttcaaaaagaatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagccgatccatcaaccatt 4365951  T
385 atggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttccctttaatctcatcga 484  Q
    ||||||||||||||||  ||||| | ||||||||||||  ||||||||||  |||| |||| ||||||||||||||||||||||||| ||||||||||      
4365952 atggtgcaacctgttactttccatatagctctatgttcctccaaagcttcatttgtcaacttaacttcatccgtcaaatatttccctctaatctcatcat 4366051  T
485 aagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgta 584  Q
    |||||||||| ||||| ||||| || ||| ||||||||| |||| |||||||  ||||||||||||||||| ||||   || | ||||| ||||||||||    
4366052 aagacggtggattaaatcctacgccttgtcttgaaaccaaatcaaacatagttttaaattcatcactctttgccgctgtaaacggtatggcattgttgta 4366151  T
585 gaaaaaccttgcaatagctcgacatgcttcatctc 619  Q
    |||||||||||||||  || |||||||||| ||||    
4366152 gaaaaaccttgcaatcacttgacatgcttcctctc 4366186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 411 - 615
Target Start/End: Complemental strand, 4414352 - 4414147
Alignment:
411 agctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt-aatctcatcgaaagacggtggcttaaaccctacacc 509  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| |||| ||||||||||||||| ||  ||||| ||||| ||||||  ||| ||||  ||    
4414352 agctctatgttctaccaaagcttcctttgtcaacttaacttcttccgccaaatatttcccttttaaggtcatcaaaagaaggtggcacaaatcctaaccc 4414253  T
510 atgttttgaaaccatatcacacatagtaataaattcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacat 609  Q
    |||| |||||||||  | ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||| |     
4414252 atgtcttgaaaccaactgacacatagtaataaactcatcactctttaccgcatcaagcggtatgtcattgttgtagaaaaaccttgcaaccgctcgagaa 4414153  T
610 gcttca 615  Q
    ||||||    
4414152 gcttca 4414147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 113 - 262
Target Start/End: Complemental strand, 4414641 - 4414493
Alignment:
113 gtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgcactgtccgtcacaatttggacaac 212  Q
    ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||   ||  ||| | |||| | |||| |||||||||||||||||    
4414641 gtgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaac 4414542  T
213 attttcttccccaacttcttcaacaatgtcatccatcatcttaaatagtt 262  Q
    |||||||| |||||| ||||| ||||| ||||||||||||||||| ||||    
4414541 attttctt-cccaacctcttctacaatttcatccatcatcttaaagagtt 4414493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 97 - 257
Target Start/End: Original strand, 4377214 - 4377374
Alignment:
97 atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgcactgtccg 196  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||   ||   |  | || | | | ||||    
4377214 atcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctttgaaataagtcgtattatccg 4377313  T
197 tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 257  Q
    | |||| ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||    
4377314 ttacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaa 4377374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 374 - 551
Target Start/End: Original strand, 4360539 - 4360716
Alignment:
374 catcgaccattatggtgcaacctgttatcttccacacagctctatgttctgccaaagcttccattgtaaactcaacttcatccgtcaaatatttcccttt 473  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||||||| ||||| ||||  | || |||| || ||| ||||  |||||||||| |      
4360539 catcgaccattatgctgcaacctgtgatcttccacatagctctatgttcttccaaaacttcattcgtcaacttaatttcttccggaaaatatttccatcc 4360638  T
474 aatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataaattcatcact 551  Q
    ||| |||  |||   |||||||||||| ||||| |||||| ||||||||| ||||||||| ||  |||||||||||||    
4360639 aatatcaaagaaccccggtggcttaaatcctacgccatgtcttgaaaccaaatcacacattgtcttaaattcatcact 4360716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 104 - 346
Target Start/End: Original strand, 4360269 - 4360514
Alignment:
104 caatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgcactgtccgtcacaat 203  Q
    |||||||  ||||||| |||||||||||||||| |||||||||||||  |||||||||| || | ||   | ||||| ||| || |   ||||| ||||     
4360269 caatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaac 4360368  T
204 ttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtg-----aacttatatcagctgattcaacagact 298  Q
     ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||  ||||  |     |||  |||||||  |  |||| || ||    
4360369 gtggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaac--atatcagacgcatcaatagtct 4360466  T
299 tcaaaaagaatgttccctttggactgtttacgaagaagtttagtatgt 346  Q
    |||||||||||||||||||||||||||| |  || |||||||||||||    
4360467 tcaaaaagaatgttccctttggactgttcagtaacaagtttagtatgt 4360514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 101 - 257
Target Start/End: Original strand, 4384791 - 4384947
Alignment:
101 tctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgcactgtccgtcac 200  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||   ||   |  | |  | | | ||||| ||    
4384791 tctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctttgaaataagccgtattatccgtgac 4384890  T
201 aatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 257  Q
    || ||| |||||||||||||||||||| ||||||||||  |||||||||||||||||    
4384891 aacttgaacaacattttcttccccaacctcttcaacaacatcatccatcatcttaaa 4384947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 442 - 614
Target Start/End: Original strand, 4390245 - 4390417
Alignment:
442 aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa 541  Q
    |||| |||||| ||| ||||||| ||||||||||||||||| |||||||| |||  |||||||||||||  | | |||||||||||||||||  ||| ||    
4390245 aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattctaacaa 4390344  T
542 attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc 614  Q
    | || | |||||| ||||| |  | | ||||  ||||||||||||||||||| ||||| |||||||| |||||    
4390345 actccttactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc 4390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 97 - 257
Target Start/End: Original strand, 4389899 - 4390057
Alignment:
97 atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagcatgttgcactgtccg 196  Q
    ||||||||||||||  ||||  |||||||||||||||||||||||||||| |||| ||||||||||||||||||   |    |  |||  | | | ||||    
4389899 atcatctcaatgcagtgtgt--cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccg 4389996  T
197 tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 257  Q
    |||||| ||| |||||||||||||| ||||| ||||||||||  |||||||||||||||||    
4389997 tcacaacttgaacaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa 4390057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 614
Target Start/End: Original strand, 4377562 - 4377734
Alignment:
442 aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa 541  Q
    |||| |||||| ||| ||||||| ||||||||||||||||| |||||||| |||  |||||||||||||  | | |||||||||||||||||   || ||    
4377562 aacttaacttcttccctcaaatacttccctttaatctcatcaaaagacggcggcacaaaccctacaccacatctcgaaaccatatcacacattcgaacaa 4377661  T
542 attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc 614  Q
    | ||   |||||| ||||| |  |   |||| | |||||||||||||||||| ||||| |||||||| |||||    
4377662 actccatactcttcaccgccttcattggtattaaattgttgtagaaaaacctcgcaatcgctcgacacgcttc 4377734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 614
Target Start/End: Original strand, 4385132 - 4385304
Alignment:
442 aactcaacttcatccgtcaaatatttccctttaatctcatcgaaagacggtggcttaaaccctacaccatgttttgaaaccatatcacacatagtaataa 541  Q
    |||| |||||| ||| ||||||| |||||| |||||||||| ||||| || |||  |||||||||||||  | | ||||||||| |||||||   || ||    
4385132 aacttaacttcttccctcaaatacttccctctaatctcatcaaaagatggcggcacaaaccctacaccacatctcgaaaccatagcacacatttgaacaa 4385231  T
542 attcatcactctttaccgcatcaagccgtatgacattgttgtagaaaaaccttgcaatagctcgacatgcttc 614  Q
    | ||   |||||| ||||| |  | | ||||  ||||||||||||||||||| ||||| |||||||| |||||    
4385232 actccatactcttcaccgccttcatcggtattgcattgttgtagaaaaacctcgcaatcgctcgacacgcttc 4385304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 4365675 - 4365711
Alignment:
114 tgttgcacaaggtgtccaatacaacctagtccttttc 150  Q
    |||||||||||| |||||||||| |||||||||||||    
4365675 tgttgcacaaggggtccaatacagcctagtccttttc 4365711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 21031640 - 21031588
Alignment:
199 acaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcat 251  Q
    ||||| ||||||||||||||||  || ||||| |||||| |||||||||||||    
21031640 acaatgtggacaacattttcttgacccacttcctcaacattgtcatccatcat 21031588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 15658753 - 15658701
Alignment:
205 tggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa 257  Q
    ||||||||||||||||| ||||  ||||||||||  ||||| |||||||||||    
15658753 tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa 15658701  T

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