View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0235_low_33 (Length: 250)

Name: NF0235_low_33
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0235_low_33
NF0235_low_33
[»] chr3 (10 HSPs)
chr3 (1-243)||(37318492-37318733)
chr3 (74-141)||(29559674-29559741)
chr3 (58-115)||(26365476-26365533)
chr3 (101-140)||(14771332-14771371)
chr3 (98-141)||(49194716-49194759)
chr3 (98-140)||(29716877-29716919)
chr3 (81-118)||(6585405-6585442)
chr3 (91-136)||(7617694-7617739)
chr3 (95-136)||(22857402-22857443)
chr3 (99-140)||(35355613-35355654)
[»] chr1 (4 HSPs)
chr1 (82-141)||(35951709-35951768)
chr1 (98-137)||(40239428-40239467)
chr1 (82-140)||(28867483-28867541)
chr1 (82-131)||(37403133-37403182)
[»] chr6 (7 HSPs)
chr6 (62-142)||(8374398-8374479)
chr6 (74-113)||(7724855-7724894)
chr6 (82-128)||(6352468-6352514)
chr6 (82-123)||(6329869-6329910)
chr6 (99-140)||(24438301-24438342)
chr6 (95-140)||(28222867-28222912)
chr6 (92-136)||(19374858-19374902)
[»] scaffold0242 (1 HSPs)
scaffold0242 (82-122)||(17971-18011)
[»] chr7 (3 HSPs)
chr7 (92-140)||(27704317-27704365)
chr7 (101-142)||(24559497-24559538)
chr7 (92-140)||(40518907-40518955)
[»] chr4 (8 HSPs)
chr4 (80-135)||(56223352-56223407)
chr4 (94-136)||(13984656-13984698)
chr4 (94-140)||(49022966-49023012)
chr4 (99-140)||(2228415-2228456)
chr4 (99-140)||(18424922-18424963)
chr4 (57-117)||(30846623-30846683)
chr4 (96-140)||(39669512-39669556)
chr4 (101-141)||(42134484-42134524)
[»] scaffold0330 (1 HSPs)
scaffold0330 (98-140)||(6772-6814)
[»] chr2 (6 HSPs)
chr2 (98-136)||(33669744-33669782)
chr2 (95-136)||(29942147-29942188)
chr2 (95-136)||(32168936-32168977)
chr2 (99-140)||(33222179-33222220)
chr2 (78-114)||(36613059-36613095)
chr2 (78-114)||(36620910-36620946)
[»] scaffold0517 (1 HSPs)
scaffold0517 (82-131)||(4894-4943)
[»] scaffold0038 (1 HSPs)
scaffold0038 (95-140)||(23365-23410)
[»] chr5 (3 HSPs)
chr5 (99-140)||(7215751-7215792)
chr5 (98-139)||(38030960-38031001)
chr5 (74-146)||(4153545-4153617)
[»] chr8 (1 HSPs)
chr8 (92-140)||(7388459-7388507)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 37318492 - 37318733
Alignment:
Q  1 taactaacctgctctttttctgttaagtagtttgttggttaaaaattcannnnnnnaaagtgaataagtgagttgtctgaagttcaaacttcaacctcta 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||| ||||||     
T  37318492 taactaacctgctctttttctattaagtagtttgttggttaaaaattcatttttttaaagtgaataagtgagttgtccgaagttcaaacttcgacctctg 37318591  T
Q  101 catatattatgcaatattcctactaactgagttaagttcatatgaacattcaatacctaattctaatcacccatgttctagaagctaaaaaacatgattt 200  Q
    ||||||||||||||||||  ||| ||| ||| |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  37318592 catatattatgcaatatttttaccaaccgagctaagttcacatgaacattcaata-ctaattctaatca-ccatgttctagaagctaaaaaacatgattt 37318689  T
Q  201 taaggcattt-cactacaaattattaacataaatgttcatctca 243  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  37318690 taaggcatttccactacaaattattaacataaatgttcatctca 37318733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 29559674 - 29559741
Alignment:
Q  74 tgtctgaagttcaaacttcaacctctacatatattatgcaatattcctactaactgagttaagttcat 141  Q
    |||| |||||||||||  | ||||||||||||| |||||||||| ||||| |||||||||||| ||||    
T  29559674 tgtccgaagttcaaaccccgacctctacatataatatgcaatatccctaccaactgagttaagctcat 29559741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 26365533 - 26365476
Alignment:
Q  58 aagtgaataagtgagttgtctgaagttcaaacttcaacctctacatatattatgcaat 115  Q
    ||||||||||||| | |||||| ||||| ||| |||||| ||||||||||||||||||    
T  26365533 aagtgaataagtgggatgtctggagttcgaacatcaacccctacatatattatgcaat 26365476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Complemental strand, 14771371 - 14771332
Alignment:
Q  101 catatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  14771371 catatattatgcattatgcctactaactgagttaagttca 14771332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 49194716 - 49194759
Alignment:
Q  98 ctacatatattatgcaatattcctactaactgagttaagttcat 141  Q
    ||||||||| |||||||||||||||| || ||||||||||||||    
T  49194716 ctacatataatatgcaatattcctaccaattgagttaagttcat 49194759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 29716877 - 29716919
Alignment:
Q  98 ctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||||||||||| |||| |||||||||| |||||||||||||    
T  29716877 ctacatatattatacaatgttcctactaaatgagttaagttca 29716919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 6585405 - 6585442
Alignment:
Q  81 agttcaaacttcaacctctacatatattatgcaatatt 118  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  6585405 agttcaaactccaacctctatatatattatgcaatatt 6585442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 7617694 - 7617739
Alignment:
Q  91 tcaacctctacatatattatgcaatattcctactaactgagttaag 136  Q
    ||||||| || |||||||||||||||| ||||| ||||||||||||    
T  7617694 tcaacctttatatatattatgcaatatccctaccaactgagttaag 7617739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 22857443 - 22857402
Alignment:
Q  95 cctctacatatattatgcaatattcctactaactgagttaag 136  Q
    ||||| |||||| |||||||||||||||| ||||||||||||    
T  22857443 cctctgcatataatatgcaatattcctaccaactgagttaag 22857402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 35355654 - 35355613
Alignment:
Q  99 tacatatattatgcaatattcctactaactgagttaagttca 140  Q
    |||||||| |||||| | ||||||||||||||||||||||||    
T  35355654 tacatatactatgcattgttcctactaactgagttaagttca 35355613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 35951709 - 35951768
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattcctactaactgagttaagttcat 141  Q
    |||| ||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  35951709 gttcgaacctcagcctctgcatatattatgcaatgttcctactaactgagttaagttcat 35951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 40239428 - 40239467
Alignment:
Q  98 ctacatatattatgcaatattcctactaactgagttaagt 137  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  40239428 ctacatatattatgcaatattcctaccaactgagttaagt 40239467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 28867541 - 28867483
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    |||| |||||||| | || |||||| |||||||||||||||| ||||||| ||||||||    
T  28867541 gttcgaacttcaagccctccatataatatgcaatattcctaccaactgagctaagttca 28867483  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 37403133 - 37403182
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattcctactaactgag 131  Q
    ||||||||| ||| | || ||||||||||||||||| |||||||||||||    
T  37403133 gttcaaactccaatccctgcatatattatgcaatatccctactaactgag 37403182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 8374479 - 8374398
Alignment:
Q  62 gaataagtgagttgtctgaagttcaaact-tcaacctctacatatattatgcaatattcctactaactgagttaagttcata 142  Q
    ||||||||| |||||||   ||||||||  |||||| ||||||||||||||||||||  |||| |||||||||||| |||||    
T  8374479 gaataagtgggttgtctagggttcaaaccctcaacccctacatatattatgcaatatctctaccaactgagttaagatcata 8374398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 7724855 - 7724894
Alignment:
Q  74 tgtctgaagttcaaacttcaacctctacatatattatgca 113  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  7724855 tgtctgtagttcaaacttcaacctttacatatattatgca 7724894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 6352468 - 6352514
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattcctactaact 128  Q
    ||||||||||||||| |||||||||||||||||| || |||| ||||    
T  6352468 gttcaaacttcaacccctacatatattatgcaatttttctaccaact 6352514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 6329869 - 6329910
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattcctac 123  Q
    ||||||||| ||||| |||||||||||||||||| |||||||    
T  6329869 gttcaaactccaacccctacatatattatgcaattttcctac 6329910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 24438301 - 24438342
Alignment:
Q  99 tacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||    
T  24438301 tacatatattatgcattattcttaccaactgagttaagttca 24438342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 28222912 - 28222867
Alignment:
Q  95 cctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||| |||||| |||||||||| ||||| ||||||||||||||||    
T  28222912 cctctgcatataatatgcaatatccctaccaactgagttaagttca 28222867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 19374858 - 19374902
Alignment:
Q  92 caacctctacatatattatgcaatattcctactaactgagttaag 136  Q
    ||||| || |||||| |||||||||||||||||||||||| ||||    
T  19374858 caacccctgcatataatatgcaatattcctactaactgagctaag 19374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 17971 - 18011
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattccta 122  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  17971 gttcaaacttcaacccctacatatattatgcaatgttccta 18011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 27704317 - 27704365
Alignment:
Q  92 caacctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||| || |||||| |||||||||||||||| ||||||||||||||||    
T  27704317 caacccctgcatataatatgcaatattcctaccaactgagttaagttca 27704365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Original strand, 24559497 - 24559538
Alignment:
Q  101 catatattatgcaatattcctactaactgagttaagttcata 142  Q
    ||||||||||||| | |||||||||||||||||||| |||||    
T  24559497 catatattatgcattgttcctactaactgagttaagctcata 24559538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 40518907 - 40518955
Alignment:
Q  92 caacctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||| |||||||||||||||||| | ||||| ||||||| ||||||||    
T  40518907 caacccctacatatattatgcaatgtccctaccaactgagctaagttca 40518955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 56223352 - 56223407
Alignment:
Q  80 aagttcaaacttcaacctctacatatattatgcaatattcctactaactgagttaa 135  Q
    |||||||||||||  || ||||||| |||||||||||| | |||||||||||||||    
T  56223352 aagttcaaacttcggcccctacatacattatgcaatatacatactaactgagttaa 56223407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 13984656 - 13984698
Alignment:
Q  94 acctctacatatattatgcaatattcctactaactgagttaag 136  Q
    |||||||||||||||||||| | ||||||| ||||||||||||    
T  13984656 acctctacatatattatgcattgttcctaccaactgagttaag 13984698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 49023012 - 49022966
Alignment:
Q  94 acctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||| |||| || |||||||||||||||| ||||||||||||||||    
T  49023012 acctccacatctaatatgcaatattcctaccaactgagttaagttca 49022966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 2228415 - 2228456
Alignment:
Q  99 tacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||    
T  2228415 tacatatattatgcattattcttactaactgagttaaattca 2228456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 18424922 - 18424963
Alignment:
Q  99 tacatatattatgcaatattcctactaactgagttaagttca 140  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  18424922 tacatataatatgcaatatccctaccaactgagttaagttca 18424963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 30846683 - 30846623
Alignment:
Q  57 aaagtgaataagtgagttgtctgaagttcaaacttcaacctctacatatattatgcaatat 117  Q
    |||| |||||| |||| |||||||||||| ||| ||||| |||| ||||||||| ||||||    
T  30846683 aaagagaataaatgaggtgtctgaagttctaacctcaacttctatatatattatacaatat 30846623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 39669512 - 39669556
Alignment:
Q  96 ctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    |||| ||||||||||||||| ||||||| ||||||| ||||||||    
T  39669512 ctctgcatatattatgcaatgttcctaccaactgagctaagttca 39669556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 42134484 - 42134524
Alignment:
Q  101 catatattatgcaatattcctactaactgagttaagttcat 141  Q
    |||||| |||||||||| |||||||||||||||||| ||||    
T  42134484 catataatatgcaatatccctactaactgagttaagctcat 42134524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 6814 - 6772
Alignment:
Q  98 ctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||    
T  6814 ctacatataatatgcaatatccctaccaactgagttaagttca 6772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 33669782 - 33669744
Alignment:
Q  98 ctacatatattatgcaatattcctactaactgagttaag 136  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  33669782 ctacatataatatgcaatatccctactaactgagttaag 33669744  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 29942147 - 29942188
Alignment:
Q  95 cctctacatatattatgcaatattcctactaactgagttaag 136  Q
    ||||| |||||| |||||||||| ||||||||||||||||||    
T  29942147 cctctgcatataatatgcaatatccctactaactgagttaag 29942188  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 32168977 - 32168936
Alignment:
Q  95 cctctacatatattatgcaatattcctactaactgagttaag 136  Q
    |||||||||||| |||||||||| ||||| ||||||||||||    
T  32168977 cctctacatataatatgcaatatccctaccaactgagttaag 32168936  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 33222179 - 33222220
Alignment:
Q  99 tacatatattatgcaatattcctactaactgagttaagttca 140  Q
    |||||||| |||||||||| ||||| ||||||||||||||||    
T  33222179 tacatataatatgcaatatccctaccaactgagttaagttca 33222220  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 36613059 - 36613095
Alignment:
Q  78 tgaagttcaaacttcaacctctacatatattatgcaa 114  Q
    |||||||||||||||||| | ||||||||||||||||    
T  36613059 tgaagttcaaacttcaacatttacatatattatgcaa 36613095  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 36620910 - 36620946
Alignment:
Q  78 tgaagttcaaacttcaacctctacatatattatgcaa 114  Q
    |||||||||||||||||| | ||||||||||||||||    
T  36620910 tgaagttcaaacttcaacatttacatatattatgcaa 36620946  T

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Target: scaffold0517 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 4943 - 4894
Alignment:
Q  82 gttcaaacttcaacctctacatatattatgcaatattcctactaactgag 131  Q
    ||||||||| ||| | || ||||||||||||||||| |||||||||||||    
T  4943 gttcaaactccaatccctgcatatattatgcaatatccctactaactgag 4894  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 23410 - 23365
Alignment:
Q  95 cctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||| |||||| |||||||||| ||||| ||||||||||||||||    
T  23410 cctctgcatataatatgcaatatccctaccaactgagttaagttca 23365  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 7215792 - 7215751
Alignment:
Q  99 tacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||||||||||||| || ||| |||||||||||||||||||    
T  7215792 tacatatattatgcattactccgactaactgagttaagttca 7215751  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 38030960 - 38031001
Alignment:
Q  98 ctacatatattatgcaatattcctactaactgagttaagttc 139  Q
    ||||||||| |||||||||||| ||| |||||||||||||||    
T  38030960 ctacatataatatgcaatattcataccaactgagttaagttc 38031001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 4153617 - 4153545
Alignment:
Q  74 tgtctgaagttcaaacttcaacctctacatatattatgcaatattcctactaactgagttaagttcatatgaa 146  Q
    |||| ||||||| |||  |||||  ||||||||  ||||||||| ||||| |||||||||||||||| |||||    
T  4153617 tgtccgaagttcgaaccccaacccatacatataaaatgcaatatccctaccaactgagttaagttcacatgaa 4153545  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 7388507 - 7388459
Alignment:
Q  92 caacctctacatatattatgcaatattcctactaactgagttaagttca 140  Q
    ||||| || |||||| |||||||||| ||||| ||||||||||||||||    
T  7388507 caacccctgcatataatatgcaatatccctaccaactgagttaagttca 7388459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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