View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0235_low_36 (Length: 237)
Name: NF0235_low_36
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_low_36 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 48593045 - 48593225
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
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| T |
48593045 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48593144 |
T |
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| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataacgatgattatgaggaagggaatg |
237 |
Q |
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| T |
48593145 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatg |
48593225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 48597656 - 48597836
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
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| T |
48597656 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
48597755 |
T |
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| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataacgatgattatgaggaagggaatg |
237 |
Q |
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| T |
48597756 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataccgatgattatgaggaagggaatg |
48597836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 23231213 - 23231033
Alignment:
| Q |
57 |
atcagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtcca |
156 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||||||| || | |||| ||||||||||| | ||||||||||||||| ||||| |
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| T |
23231213 |
atcagaactgtttaacaatccaagggtgttgaaaaaagctcaagaggaggtagagagagttgtaggaaaggaaagattagtgtgtgaagaagacagtcca |
23231114 |
T |
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| Q |
157 |
aaccttccttatatacatgctatcataaaagaaacaatgaggcttcatcccccgataacgatgattatgaggaagggaatg |
237 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||| |||||||||||||||| |||||| |
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| T |
23231113 |
aaccttccttatatacatgccatcataaaagaaaccatgaggcttcaccctccgataccgatgattatgaggaaaggaatg |
23231033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 203
Target Start/End: Complemental strand, 23223466 - 23223322
Alignment:
| Q |
59 |
cagaactgtttaacaatccaagggtgctgaaaaaagcacaagaggaggtggatatagttactagaaaggaaagacttgtgtgtgaagaagacggtccaaa |
158 |
Q |
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|||||||||| |||||||||| || ||||| ||||||||||| |||||||| | | | | | ||||||||||| || ||||||| |||| |||||| |
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| T |
23223466 |
cagaactgttcaacaatccaatagtactgaagaaagcacaagaagaggtggagagaataatagggaaggaaagactagtatgtgaagcagacattccaaa |
23223367 |
T |
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| Q |
159 |
ccttccttatatacatgctatcataaaagaaacaatgaggcttca |
203 |
Q |
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||||||||||||||| || || |||||||||||| |||||||||| |
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| T |
23223366 |
ccttccttatatacaagccattataaaagaaacattgaggcttca |
23223322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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