View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0235_low_4 (Length: 626)
Name: NF0235_low_4
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0235_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 125 - 620
Target Start/End: Complemental strand, 20810626 - 20810131
Alignment:
| Q |
125 |
gagagttcgctaaatttgtctctagggtttggtcgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810626 |
gagagttcgctaaatttgtctctagggtttggttgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
20810527 |
T |
|
| Q |
225 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810526 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttt |
20810427 |
T |
|
| Q |
325 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatc |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| |
|
|
| T |
20810426 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttatttttccccaatgcaacaccatgaatc |
20810327 |
T |
|
| Q |
425 |
ttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaac |
524 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810326 |
ttctgctttatttcaaagagatctaaaagaagttgtttttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaac |
20810227 |
T |
|
| Q |
525 |
ttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatgatac |
620 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810226 |
ttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgcctgatccacccattccccatatccctatgatac |
20810131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 125 - 620
Target Start/End: Complemental strand, 20836981 - 20836486
Alignment:
| Q |
125 |
gagagttcgctaaatttgtctctagggtttggtcgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20836981 |
gagagttcgctaaatttgtctctagggtttggttgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtaga |
20836882 |
T |
|
| Q |
225 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
20836881 |
catggtcaactttaaatgacttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggatttgcacacagtgcttt |
20836782 |
T |
|
| Q |
325 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||| ||| |||||| |
|
|
| T |
20836781 |
taattgctcagacttggtcacatcatcgagtacgaccaaaaccttttgtcgctggagtcttgtcatgattttagttttccccaatgcaatactgtgaatc |
20836682 |
T |
|
| Q |
425 |
ttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaac |
524 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20836681 |
ttctgttttatttcaaggagatctaaaagaagttgttcttgtaaagtaataacccctccactattattatcacaaacttctctaatactttcaaggaaac |
20836582 |
T |
|
| Q |
525 |
ttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatgatac |
620 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20836581 |
ttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggttgttttgcctaatccacccattccccatatccctatgatac |
20836486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 20839624 - 20839530
Alignment:
| Q |
30 |
agcagtactgttgtcgattctttatgaatagacgtatgcaacaactcgaacnnnnnnnnnctaataaagggttacattatggaaacatttagctt |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20839624 |
agcagtactgttgtcgattctttatgaatagacgtatgcaacaactcgaactttttttttctaataaagggttacattatggaaacatttagctt |
20839530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 20813096 - 20813067
Alignment:
| Q |
30 |
agcagtactgttgtcgattctttatgaata |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
20813096 |
agcagtactgttgtcgattctttatgaata |
20813067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 143 - 615
Target Start/End: Complemental strand, 31174352 - 31173880
Alignment:
| Q |
143 |
tctctagggtttggtcgttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatg |
242 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||| ||||||||||||||| |||| |||||||||||| ||||| ||| ||| |||||| | ||| || |
|
|
| T |
31174352 |
tctctaggatttggttgttgaaaagcatgccaacagaaaagttcaagggactggtatttgtccatttccgtcattgtgaagatatggtcgtcactaagtg |
31174253 |
T |
|
| Q |
243 |
acttgagaaggcgtaaatctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggt |
342 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||||| |||||||||||||| | |||| |
|
|
| T |
31174252 |
agttgagaaggcgtgcatctctagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacagggcttttaattgctcgggtgtggt |
31174153 |
T |
|
| Q |
343 |
cacatcatcgagtacgaccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaagg |
442 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||| || || ||||| ||||| || ||| |||||||||| || ||||||| ||| |
|
|
| T |
31174152 |
cacatcatcgagtacgatgaaagccttttgtcctcgaagtcttttctctatcttagtcatccccaatgcaatgctatgaatctcttgttttatttgcagg |
31174053 |
T |
|
| Q |
443 |
agatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatc |
542 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||| || | |
|
|
| T |
31174052 |
agatctaaaagaagttgttgttgtaaatgaataacccctctagaattattatcacaaacttctcgaatactttcaaagaaacttgttctaccttcaaacc |
31173953 |
T |
|
| Q |
543 |
tacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctat |
615 |
Q |
| |
|
|||||||||||| |||||||| | |||||| ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
31173952 |
tacgatggattttattgtagatagctttggctgtggttgttttcccggatccacccattccccatatccctat |
31173880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 160 - 620
Target Start/End: Original strand, 3400213 - 3400673
Alignment:
| Q |
160 |
ttgaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaa |
259 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||| || ||||||||| ||||| ||| ||| ||||||| | ||| ||| |||||||||||| | |
|
|
| T |
3400213 |
ttgaaaagcatgccaacagaaaagttcaagggactggtcttcgtccatttctgtcattgtgaagatatggtcaccactaagtgatttgagaaggcgtcca |
3400312 |
T |
|
| Q |
260 |
tctctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggtcacatcatcgagtacga |
359 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||||||||||| | ||||||| ||||||||||||||| ||||||||||||| |||| || |
|
|
| T |
3400313 |
tctctagttgtaataatcaatacacttcccgaaccgaacaacttaggatctgcacacaggttttttaattgctcagatgtggtcacatcatcaagtatga |
3400412 |
T |
|
| Q |
360 |
ccaaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaaggagatctaaaagaagttg |
459 |
Q |
| |
|
| ||||| ||||||| |||||||| || || |||||| |||| | ||| |||||||||| || ||||||| | |||||||||||||||||| |
|
|
| T |
3400413 |
caaaaactgtttgtcctcgaagtcttttctcaatcttagttatccctgaggcaatgctatgaatctcttgttttattttcaagagatctaaaagaagttg |
3400512 |
T |
|
| Q |
460 |
ttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatctacgatggatttgattg |
559 |
Q |
| |
|
|| |||||||| |||| |||||||| ||||||||||||||||||||| ||||||||| | |||||||| ||||| | |||||| | ||||||||||| |
|
|
| T |
3400513 |
ttgttgtaaaggaataacccctctattattattatcacaaacttctcgaatactttcgatgaaacttgctctacccttaaatctagaacggatttgattg |
3400612 |
T |
|
| Q |
560 |
tagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctatgatac |
620 |
Q |
| |
|
|||| | |||||| |||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
3400613 |
tagatagctttggccgtggttgttttcccggatccacccattccccatatccctatcatac |
3400673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 3397501 - 3397596
Alignment:
| Q |
30 |
agcagtactgttgtcgattctttatgaatagacgtatgcaacaactcgaa-cnnnnnnnnnctaataaagggttacattatggaaacatttagctt |
124 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
3397501 |
agcagtactgttgtcacttctttatgaatagacgtatgcaacaacttgaagcttttgttttctaatgaagggttacattatggaaacattttgctt |
3397596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 162 - 608
Target Start/End: Original strand, 8373325 - 8373768
Alignment:
| Q |
162 |
gaaaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaatc |
261 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | || ||| ||||||||| |||| ||| |||| || || ||| ||| | |||| ||| | ||| |
|
|
| T |
8373325 |
gaaaagcatgccagctgaaaagttcaagggactcgtttttatccatttcaatcattgtgaagacgcgggcac---taagtgaatcgagatggcttcgatc |
8373421 |
T |
|
| Q |
262 |
tctagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggtcacatcatcgagtacgacc |
361 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8373422 |
tctagttgtaataatcaatacacttcctgaaccaaacaacttaggatttccacccagagcttttaattgctcagacttggtcacatcatcaagtacgatt |
8373521 |
T |
|
| Q |
362 |
aaaaccttttgtccctgaagtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaaggagatctaaaagaagttgtt |
461 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| || ||||| | ||| ||||| ||||| | ||| ||| ||||||||| |||||||||||| |
|
|
| T |
8373522 |
aaaaccttttgtccctgaagtcttttctcgatcttatttatccccactgcaatgctatgtatcttatcttttgtttttaggagatctgaaagaagttgtt |
8373621 |
T |
|
| Q |
462 |
cttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatctacgatggatttgattgta |
561 |
Q |
| |
|
| |||||| |||| |||| | ||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||| |||||||||| ||||||| |
|
|
| T |
8373622 |
cctgtaaatgaataatcccttttctattataatcacaaacttctcgaatactttcaatgaaacttgttttaccctggaattcacgatggattcgattgta |
8373721 |
T |
|
| Q |
562 |
gagacctttggtcgtggttgttttgcctgatccacccattccccata |
608 |
Q |
| |
|
|| | |||||| | ||| ||||| || ||||||||||||||||||| |
|
|
| T |
8373722 |
gatagctttggccaaggtagttttcccggatccacccattccccata |
8373768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 164 - 359
Target Start/End: Original strand, 31060429 - 31060624
Alignment:
| Q |
164 |
aaagcatgacaactgaaaagttcaagggattggtgtttgtccatttcagtcatggtgtagacatggtcaactttaaatgacttgagaaggcgtaaatctc |
263 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| || | ||||||| ||| ||| ||||||||||| | ||| ||| ||||||||| || ||||| |
|
|
| T |
31060429 |
aaagcatgccaactgaaaagttcaagtgactggttttcgaccatttctaccattgtgaagacatggtcagcactaagtgatttgagaaggtgttcatctc |
31060528 |
T |
|
| Q |
264 |
tagtggtaataatcaatacactccccgaacctaacaacttaggattttcacacagagcttttaattgctcagacttggtcacatcatcgagtacga |
359 |
Q |
| |
|
| || |||| |||||||||| | | |||||| || |||||| |||| ||||||| |||||||||| | || |||||||||||||||| ||||||| |
|
|
| T |
31060529 |
tggttgtaaaaatcaatacagttcgcgaaccaaagaacttacaatttacacacagggcttttaatttcccaaacttggtcacatcatcaagtacga |
31060624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 615
Target Start/End: Original strand, 32412971 - 32413011
Alignment:
| Q |
575 |
gtggttgttttgcctgatccacccattccccatatccctat |
615 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
32412971 |
gtggttgttttacctgatccccccattccccaaatccctat |
32413011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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