View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0235_low_7 (Length: 524)
Name: NF0235_low_7
Description: NF0235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0235_low_7
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 46 - 412
Target Start/End: Complemental strand, 20123489 - 20123126
Alignment:
Q
46
tgtggcaataagcattgacaacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggttttgaaataaagactgaa
145
Q
||||||| |||||| || ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||
T
20123489
tgtggcagtaagcaatgccaacgaagacagtgtaaaacgtcttgtagatgcaatagtaaag---catgatgatcaaagtggttttgaaataaagactgaa
20123393
T
Q
146
agaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatttgattaaag
245
Q
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||
T
20123392
agaggtgatactcctcttcaccttgcagcatatagaggattcaaaagtatgtgtcaatgtatcattggaaaatatggtgaaaggaagcatttgattcaag
20123293
T
Q
246
taaaaaatacaaagggagaaacaccactcttttctgctgtgcttgtacgcaatgaagagacctttatttacctacatcaatttttcaaatctgatatcaa
345
Q
|||| ||| ||||||||||||||||||| |||| ||||||||||| |||| || || |||||||| ||||||||||||| |||||| |||||||||||
T
20123292
taaacaatgcaaagggagaaacaccacttttttgtgctgtgcttgcacgccataaaaagacctttctttacctacatcattttttcccatctgatatcac
20123193
T
Q
346
tattgctatcaataacaatggcgctaccatacttcaagttgccattcagagagaattgttcggttag
412
Q
|||||||||||||||| ||| |||||||| ||||| ||||||||||| |||||| |||||||||||
T
20123192
tattgctatcaataacgttggtgctaccattcttcacgttgccattcatagagaaatgttcggttag
20123126
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 64 - 400
Target Start/End: Original strand, 19896344 - 19896683
Alignment:
Q
64
caacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt
163
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
T
19896344
caacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggtttggaaataaagactgaaaaaggtgatactcctctt
19896443
T
Q
164
caccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatttgattaaagtaaaaaatacaaagggag
263
Q
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||| || ||||| ||||||||
T
19896444
caccttgcagcatatagaggattcacaagtatgtgtgaatgtatcattggaaaaaatggtgaaaggaagcatttgattagagaccaaaatgaaaagggag
19896543
T
Q
264
aaacaccactcttttctgctgtgcttgtacgc---aatgaagagacctttatttacctacatcaatttttcaaatctgatatcaatattgctatcaataa
360
Q
||||||||||||||| | ||||||||| | || ||| || |||||||| ||||||||||||| |||||| |||||||| || |||||||||||||||
T
19896544
aaacaccactcttttgtactgtgcttgcaggcataaataaaaagacctttctttacctacatcattttttcccatctgataccagtattgctatcaataa
19896643
T
Q
361
caatggcgctaccatacttcaagttgccattcagagagaa
400
Q
| ||| |||||||| ||||| |||||||||| |||||||
T
19896644
cgttggtgctaccattcttcacgttgccattcggagagaa
19896683
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 64 - 412
Target Start/End: Complemental strand, 20089615 - 20089270
Alignment:
Q
64
caacgaagacattgtaaaacgtcttgtagatgtaatagtaaagaagcataatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt
163
Q
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
T
20089615
caacgaagacattgtaaaacgtcttgtagatgcaatagtaaag---catgatgatcaaagtggttttgaaataaagactgaaagaggtgatactcctctt
20089519
T
Q
164
caccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatttgattaaagtaaaaaatacaaagggag
263
Q
|| |||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||||||||
T
20089518
catcttgcagcatatagaggattcaaaagtatgtgtgaatgtatcattggaaaaaatggtgaaaggaagcatttgattcaagtaaacaatgcaaagggag
20089419
T
Q
264
aaacaccactcttttctgctgtgcttgtacgcaatgaagagacctttatttacctacatcaatttttcaaatctgatatcaatattgctatcaataacaa
363
Q
|||||||||| |||| ||||||||||| |||| || || ||||||||||||| |||||||| ||||||| | |||| ||||||||||||||||||| |
T
20089418
aaacaccacttttttgtgctgtgcttgcacgccataaaaagacctttatttatctacatcagtttttcacaaatgatctcaatattgctatcaataaaga
20089319
T
Q
364
tggcgctaccatacttcaagttgccattcagagagaattgttcggttag
412
Q
| | | || ||| ||||| ||||| ||||| |||||| |||||||||||
T
20089318
tcgtgataacatccttcacgttgcaattcatagagaaatgttcggttag
20089270
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 20143548 - 20143444
Alignment:
Q
137
aagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatt
236
Q
|||| ||||| |||||| |||||| | ||||||||||||| |||||||||| | || ||| |||||||||| ||| ||| ||||||||| |||||||
T
20143548
aagaatgaaaaaggtgacactcctttgcaccttgcagcatcaagaggattcaaagatatatgtgaatgtatcataggagaatgtggtgaaagaaaggatt
20143449
T
Q
237
tgatt
241
Q
|||||
T
20143448
tgatt
20143444
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 23269641 - 23269745
Alignment:
Q
137
aagactgaaagaggtgatactcctcttcaccttgcagcatatagaggattcacaagtaagtgtcaatgtatcattggaaaatatggtgaaaggaaggatt
236
Q
|||| ||||| |||||| |||||| | ||||||||||||| |||||||||| | || ||| |||||||||| ||| || ||||||||| |||||||
T
23269641
aagaatgaaaaaggtgacactcctttgcaccttgcagcatcaagaggattcaaagatatatgtgaatgtatcataggagaaggtggtgaaagaaaggatt
23269740
T
Q
237
tgatt
241
Q
|||||
T
23269741
tgatt
23269745
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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