View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_high_20 (Length: 316)
Name: NF0238_high_20
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_high_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 34 - 316
Target Start/End: Complemental strand, 8140098 - 8139816
Alignment:
| Q |
34 |
caattacctgatattttcttttgtatactctgactgcagcagcatgagaaagtatcaagttatgagcaacaatgtagggctctgtacttgagtcaccagt |
133 |
Q |
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| T |
8140098 |
caattacctgatattttctcttgtatactctgactgcagcagcatgagaaagtatcaagttatgagcaacaatgtagggctctgtacttgagtcaccagt |
8139999 |
T |
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| Q |
134 |
agtgcaatttgctacatatttagaacatctaccaggtgcaaaggtaccaccattatatccattaatggtgtatgaataaggttcattaagtgtcacccaa |
233 |
Q |
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| T |
8139998 |
agtgcaatttgcaacatatttagaacatctaccaggtgcaaaagtaccaccattatatccattgatggtgtatgaataaggttcattaagtgtcacccaa |
8139899 |
T |
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| Q |
234 |
tgcttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaatccttcctgttttatccattaaattaaga |
316 |
Q |
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| T |
8139898 |
tgcttaaccctatctccaaatgtcttgaagcaaaagtcagcatagactgcgaaatccttcctgttttatccattaaattaaga |
8139816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 67 - 314
Target Start/End: Complemental strand, 8163964 - 8163717
Alignment:
| Q |
67 |
ctgcagcagcatgagaaagtatcaagttatgagcaacaatgtagggctctgtacttgagtcaccagtagtgcaatttgctacatatttagaacatctacc |
166 |
Q |
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| T |
8163964 |
ctgcagcagcatgagaaagtataaagtgatgagcaacaatgtagggttctgtagttgagtcaccagtagagcaatttccaacatatttagagcatcttgc |
8163865 |
T |
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| Q |
167 |
aggtgcaaaggtaccaccattatatccattaatggtgtatgaataaggttcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaa |
266 |
Q |
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| T |
8163864 |
aggtggagaagtgcctccatggtatccattaatggtgtaggaaacaggctcattaagtgtcacccaatgcttaaccctatctccaaatgtcttgaagcaa |
8163765 |
T |
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| Q |
267 |
aagtcagcatagactgcgaaatccttcctgttttatccattaaattaa |
314 |
Q |
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| T |
8163764 |
aaatcagcataggcttcaaaatccttcctattttattcattaaattaa |
8163717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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