View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0238_high_21 (Length: 293)

Name: NF0238_high_21
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0238_high_21
NF0238_high_21
[»] chr2 (8 HSPs)
chr2 (13-264)||(29801777-29802033)
chr2 (40-264)||(31486713-31486936)
chr2 (40-264)||(31488997-31489220)
chr2 (40-251)||(34576735-34576967)
chr2 (13-109)||(15729886-15729981)
chr2 (211-264)||(42275686-42275739)
chr2 (211-264)||(42277912-42277965)
chr2 (213-264)||(23860005-23860056)
[»] chr4 (11 HSPs)
chr4 (85-263)||(8739267-8739445)
chr4 (13-264)||(45166874-45167124)
chr4 (70-264)||(50855892-50856085)
chr4 (40-264)||(42468570-42468793)
chr4 (40-264)||(42470899-42471122)
chr4 (13-264)||(45161982-45162232)
chr4 (155-264)||(19429208-19429317)
chr4 (211-264)||(13774151-13774204)
chr4 (211-264)||(13776449-13776502)
chr4 (162-213)||(43179590-43179641)
chr4 (169-210)||(24908240-24908281)
[»] chr7 (15 HSPs)
chr7 (13-264)||(3932518-3932768)
chr7 (13-264)||(3934757-3935007)
chr7 (13-264)||(36464354-36464604)
chr7 (40-264)||(8733628-8733848)
chr7 (78-264)||(19786631-19786816)
chr7 (78-264)||(19788937-19789122)
chr7 (13-264)||(8414622-8414871)
chr7 (13-264)||(3052003-3052257)
chr7 (40-213)||(42678752-42678932)
chr7 (13-127)||(16497075-16497189)
chr7 (13-127)||(16535257-16535371)
chr7 (13-127)||(16630291-16630405)
chr7 (211-264)||(8731306-8731359)
chr7 (211-264)||(28610371-28610424)
chr7 (40-106)||(8414808-8414874)
[»] chr1 (11 HSPs)
chr1 (13-264)||(29833206-29833456)
chr1 (40-264)||(2403958-2404181)
chr1 (40-264)||(734709-734932)
chr1 (40-264)||(8933671-8933911)
chr1 (191-264)||(29833852-29833925)
chr1 (211-264)||(10909108-10909161)
chr1 (208-264)||(2410080-2410136)
chr1 (49-120)||(419213-419284)
chr1 (211-264)||(10911352-10911405)
chr1 (126-193)||(18353725-18353792)
chr1 (211-264)||(13011698-13011751)
[»] chr3 (5 HSPs)
chr3 (29-264)||(18966242-18966489)
chr3 (126-210)||(8535493-8535578)
chr3 (211-264)||(4530835-4530888)
chr3 (126-211)||(1701094-1701179)
chr3 (217-264)||(4533138-4533185)
[»] chr8 (7 HSPs)
chr8 (13-264)||(21268261-21268510)
chr8 (40-264)||(36379598-36379821)
chr8 (40-264)||(4876822-4877045)
chr8 (40-264)||(4879150-4879373)
chr8 (13-264)||(36377313-36377563)
chr8 (40-264)||(24519285-24519508)
chr8 (13-106)||(21268447-21268540)
[»] chr5 (9 HSPs)
chr5 (40-264)||(23164371-23164594)
chr5 (40-264)||(37207702-37207925)
chr5 (40-264)||(11850038-11850261)
chr5 (40-264)||(1779339-1779579)
chr5 (40-264)||(22600742-22600965)
chr5 (13-264)||(11852296-11852546)
chr5 (13-237)||(1779600-1779840)
chr5 (155-264)||(37215407-37215516)
chr5 (13-106)||(37207645-37207738)
[»] scaffold0050 (2 HSPs)
scaffold0050 (128-264)||(29257-29392)
scaffold0050 (128-264)||(31570-31707)
[»] scaffold0599 (1 HSPs)
scaffold0599 (175-264)||(1580-1669)
[»] chr6 (1 HSPs)
chr6 (70-195)||(21199149-21199281)
[»] scaffold0312 (1 HSPs)
scaffold0312 (49-120)||(11287-11358)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 29801777 - 29802033
Alignment:
Q  13 aatatggaagtccctggaataataaaaaa-taatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaa 111  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29801777 aatatggaagtctctagaataataaaaaaataatatggaagtctctagaacaccaaagaataatagggaagtatctagaatactaaagaataataaggaa 29801876  T
Q  112 tcta----ctagacactctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagactttt 207  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29801877 tctagctactagacactctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagactttt 29801976  T
Q  208 ctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||    
T  29801977 ctttgtttgtagatatttctagtttgtaatggggagtcttcctagagtagtataaat 29802033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 31486713 - 31486936
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| |||||| |||||||  || | | |||||||  ||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  |||||||    
T  31486713 aataatgtggaagcctctagaagactagagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaa--taagcac 31486810  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||     
T  31486811 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatg 31486910  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  31486911 gagagccttcctagagtagtataaat 31486936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 31488997 - 31489220
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| |||||||||||| |  || ||| |||||||  ||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  |||||||    
T  31488997 aataatgtggaagtctctaaaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaa--taagcac 31489094  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || |||||   |||||| |||||||||  | |||| |||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||     
T  31489095 tagggaagtcttagcttttctagatccttctaagcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatg 31489194  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||| ||| ||||||||    
T  31489195 gagagccttcctaaagtagtataaat 31489220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 251
Target Start/End: Complemental strand, 34576967 - 34576735
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacactcta------------ 127  Q
    |||||| |||||||||||||| ||| ||| ||||||| |||||| |||| |||||||||||||||  ||||| ||||| |||||||||                
T  34576967 aataatgtggaagtctctagaacactaaagaataatatggaagtctctaaaatactaaagaataacgaggaagctactggacactctactaaataaaata 34576868  T
Q  128 aaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctt---------tgtttcta 218  Q
    |||||| ||||| || |||||||||  |||||| |||||||||||||||||||||| || || ||| ||||||||||||||||         ||||||||    
T  34576867 aaattacgcactagagaaatcttaacttttctagatccttctagtcatatgaactagagtattcatgtctctagacttttctttgtaatcaatgtttcta 34576768  T
Q  219 gatatttctagtttgtaatcgggagccttccta 251  Q
    |||||||||||||||||||   |||||||||||    
T  34576767 gatatttctagtttgtaatgtagagccttccta 34576735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 15729886 - 15729981
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataagg 109  Q
    |||||||| ||| || ||| |||||| |||||| ||||||||||||||| |  ||| |||| || |||||| |||||||||||||||||||||||||    
T  15729886 aatatggatgtctctagaacaataaagaataatgtggaagtctctagac-ataaaagaatattaaggaagtctctagaatactaaagaataataagg 15729981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 42275739 - 42275686
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  42275739 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaat 42275686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 42277965 - 42277912
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||| ||||||||||| ||||||||    
T  42277965 tgtttctagatatttctagtttgtaatgtagagtcttcctagagtagtataaat 42277912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 23860005 - 23860056
Alignment:
Q  213 tttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||| ||||||||||||||   ||||||||||||||| ||||||||    
T  23860005 tttctagataattctagtttgtaatgtagagccttcctagagtagtataaat 23860056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 85 - 263
Target Start/End: Original strand, 8739267 - 8739445
Alignment:
Q  85 tctagaatactaaagaataataaggaatctactagacactctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactat 184  Q
    ||||||||||||| ||||||||||||| |||||| |||| ||||||||| ||||| |  ||||||||||||||||| ||||||||||||||||||||||     
T  8739267 tctagaatactaatgaataataaggaagctactatacacactaaaattatgcactagggaaatcttaatgtttctagatccttctagtcatatgaactag 8739366  T
Q  185 agcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaa 263  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||    
T  8739367 agcatccatatctctagatttttctttgtttctagatatttctagtttgtaatgtagagccttcctagagttgtataaa 8739445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 45166874 - 45167124
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||||| || ||||  | || |||||||||||||||||||||  || ||| |||||||  ||||| | ||||||||||  |||||||||||||     
T  45166874 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataaggaag 45166973  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || |||| |  |||||| ||||||||||   |||| |||| || ||||||||||||||||||||||||    
T  45166974 ctactagacactactaaa--taagcactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttcttt 45167071  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||| | ||| ||||||||| | ||||||||    
T  45167072 gtttctagatatttctagtttgtaatggagagtcttcctagaatagtataaat 45167124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 70 - 264
Target Start/End: Complemental strand, 50856085 - 50855892
Alignment:
Q  70 aataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttc 168  Q
    ||||||| |||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  |||||||| |  || ||||||  |||||| |||||||    
T  50856085 aataatatggaagtctctagaatactatggaataataaggaagctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttc 50855988  T
Q  169 tagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||| | |||| || | || |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||    
T  50855987 taggcttatgtaccagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaat 50855892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 42468793 - 42468570
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||||||||||||||||||      || ||||||| |||||  |||||||||||   ||||||||||||| |||||||| ||| |||||  |||||||    
T  42468793 aataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagatactactaaa--taagcac 42468696  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42468695 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 42468596  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  42468595 gagagccttcctagagtagtataaat 42468570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 42471122 - 42470899
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||||||||||||||||||      || ||||||| |||||  |||||||||||   ||||||||||||| |||||||| ||| |||||  |||||||    
T  42471122 aataatatggaagtctctagaatggtgaagaataatatggaagactctagaatacttgggaataataaggaagctactagatactactaaa--taagcac 42471025  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42471024 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 42470925  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  42470924 gagagccttcctagagtagtataaat 42470899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 45161982 - 45162232
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||||| || ||||  | || |||||||||||||||||||||  || ||| |||||||  ||||| | ||||||||||  |||||||||| ||     
T  45161982 aatatggaagtctctagaatggtgaagaataatatggaagtctctagaagactaaagaataatatagaagtctttagaatactagggaataataagaaag 45162081  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || |||| |  |||||| ||||||||||   |||| |||| || ||||||||||||||||||||||||    
T  45162082 ctactagacactactaaa--taagcactagggaagtctttacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttcttt 45162179  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||| | ||| ||||||||| | ||||||||    
T  45162180 gtttctagatatttctagtttgtaatggagagtcttcctagaatagtataaat 45162232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 19429317 - 19429208
Alignment:
Q  155 tttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagag 254  Q
    |||||| |||||||||||  |||| |||| || || ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| |||||||    
T  19429317 tttctagatccttctagttttatgtactagagtattcatatctctagacttttctttgtttatagatatttctagtttgtaatggagagcctacctagag 19429218  T
Q  255 tggtataaat 264  Q
    | ||||||||    
T  19429217 tagtataaat 19429208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 13774151 - 13774204
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  13774151 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaat 13774204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 13776449 - 13776502
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  13776449 tgtttctagatatttctagtttgtaatgcagagccttcctagagtagtataaat 13776502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 43179590 - 43179641
Alignment:
Q  162 atccttctagtcatatgaactatagcatccatatctctagacttttctttgt 213  Q
    |||||||||||||||||||||| || |||||| |||||| ||||||||||||    
T  43179590 atccttctagtcatatgaactagagtatccatgtctctatacttttctttgt 43179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 24908281 - 24908240
Alignment:
Q  169 tagtcatatgaactatagcatccatatctctagacttttctt 210  Q
    ||||||||||||||| || |||||||||| ||||||||||||    
T  24908281 tagtcatatgaactaaagtatccatatctttagacttttctt 24908240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 3932518 - 3932768
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||||| || |||| || || |||||||||||||||||||||  || ||| ||||||| |||||  ||||||||||||  |||||||||||||     
T  3932518 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaag 3932617  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||| ||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | |||| |||| || ||||||||||||||||||||||||    
T  3932618 ctactagatactactaaa--taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttcttt 3932715  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||| | ||||||||||||| | ||||||||    
T  3932716 gtttctagatatttctagtttgtaatggagagccttcctagaatagtataaat 3932768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 3934757 - 3935007
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||||| || |||| || || |||||||||||||||||||||  || ||| ||||||| |||||  ||||||||||||  |||||||||||||     
T  3934757 aatatggaagtctctagaatgatgaagaataatatggaagtctctagaagactaaagaataatatggaagactctagaatactagggaataataaggaag 3934856  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||| ||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | |||| |||| || ||||||||||||||||||||||||    
T  3934857 ctactagatactactaaa--taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttcttt 3934954  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||| | ||||||||||||| | ||||||||    
T  3934955 gtttctagatatttctagtttgtaatggagagccttcctagaatagtataaat 3935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 36464604 - 36464354
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||| | || ||||| || | |||||| |||||||||||||| ||| |||||||||||  ||||| ||||||||||||  |||||||||||||     
T  36464604 aatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaataataatatagaagtctctagaatactagggaataataaggaag 36464505  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || |||| |  |||||| |||||||||||  |||| |||| || ||||||||||| ||||||||||||    
T  36464504 ctactagacactactaaa--taagcactagggaagtcttgacttttctagatccttctagttttatgtactagagtatccatatctccagacttttcttt 36464407  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||||||||| |||| | ||||||||||||||| ||||||||    
T  36464406 gtttctagatatttctagtttataatggagagccttcctagagtagtataaat 36464354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 8733848 - 8733628
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    ||||||||||||||||||||| ||| ||| |||||||  ||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  |||||||    
T  8733848 aataatatggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaa--taagcac 8733751  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |     ||||||  |||||| |||||||||| | |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||      
T  8733750 taggg---tcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaaag 8733654  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  8733653 gagagccttcctagagtagtataaat 8733628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 264
Target Start/End: Original strand, 19786631 - 19786816
Alignment:
Q  78 ggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcata 176  Q
    |||||| ||||||||| ||  ||||||||||||| |||||||||||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | ||    
T  19786631 ggaagtctctagaatattagggaataataaggaagctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttctaggctta 19786728  T
Q  177 tgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  19786729 tgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaat 19786816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 78 - 264
Target Start/End: Original strand, 19788937 - 19789122
Alignment:
Q  78 ggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcata 176  Q
    |||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | ||    
T  19788937 ggaagtctctagaatactagggaataataaggaagctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttctaggctta 19789034  T
Q  177 tgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||||||||    
T  19789035 tgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttactagagtagtataaat 19789122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 8414871 - 8414622
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||| | || ||||| || | |||||| ||||||| |||||| ||| ||| |||||||  ||||| ||||||||||||  |||||||||||||     
T  8414871 aatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaaa 8414772  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || |||| |  |||||| ||| |||||||  |||  |||| |  ||||||||||||||||||||||||    
T  8414771 ctactagacactactaaa--taagcactagggaagtcttgacttttctagatc-ttctagttttatatactaaaatatccatatctctagacttttcttt 8414675  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| ||||||||    
T  8414674 gtttctagatttttctagtttgtaatggagagccttcctagagtagtataaat 8414622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 3052003 - 3052257
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataa----taag 108  Q
    |||||||||| | || ||||| || | |||||| | |||||||||| | ||| ||| |||||||  ||||| |||||||||||| | |||||    ||||    
T  3052003 aatatggaagactctagaatactagagaataatgtcgaagtctctataacactaaagaataatatagaagtctctagaatactagataataaataataag 3052102  T
Q  109 gaatctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagactttt 207  Q
    ||| |||||||||||| |||||  |||||| | |  || ||||||  |||||| |||||||||||  |||| |||| |  ||||||||||||||||||||    
T  3052103 gaagctactagacactactaaa--taagcattagggaagtcttaacttttctagatccttctagttttatgtactagaatatccatatctctagactttt 3052200  T
Q  208 ctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  3052201 ctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaat 3052257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 42678932 - 42678752
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacactcta-------aaatt 132  Q
    |||||||||||||| ||||||  || ||| ||||||| |||||| |||| |||||||  ||||||||||||| |||||||||||||||       ||||     
T  42678932 aataatatggaagtttctagaaaactaaagaataatatggaagtctctaaaatactatggaataataaggaagctactagacactctactaaataaaata 42678833  T
Q  133 aagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgt 213  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||| ||| || |||||| | ||||| | |||||||||    
T  42678832 aagcactaggaaaatcttaatgtttctagatccttctagtcatatgacctagagtatccatgtttctaggcctttctttgt 42678752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 16497189 - 16497075
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||||| || |||| || || ||||||||||| | |||||||  |  ||| ||||||  |||||| ||||||||||||  |||||||||||||     
T  16497189 aatatggaagtctctagaatgatcaagaataatatggatgcctctagaataataaagaataatgtggaagtttctagaatactatggaataataaggaag 16497090  T
Q  113 ctactagacactcta 127  Q
    |||||||||||||||    
T  16497089 ctactagacactcta 16497075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 16535371 - 16535257
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    ||||||||||||  | |||| || || ||||||||||||| |||||||  |  ||| ||||||  |||||| ||||||||||||  ||||||||| |||     
T  16535371 aatatggaagtctatagaatgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaag 16535272  T
Q  113 ctactagacactcta 127  Q
    |||||||||||||||    
T  16535271 ctactagacactcta 16535257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 16630291 - 16630405
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    ||||||||||||  | |||| || || ||||||||||||| |||||||  |  ||| ||||||  |||||| ||||||||||||  ||||||||| |||     
T  16630291 aatatggaagtctatagaatgatcaagaataatatggaagcctctagaataataaagaataatgtggaagtctctagaatactatggaataataaagaag 16630390  T
Q  113 ctactagacactcta 127  Q
    |||||||||||||||    
T  16630391 ctactagacactcta 16630405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 8731359 - 8731306
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||| ||||||||   ||||||||||||||| ||||||||    
T  8731359 tgtttctagatatttctaatttgtaatgtagagccttcctagagtagtataaat 8731306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 28610424 - 28610371
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||||||| ||||||| ||||||||    
T  28610424 tgtttctagatatttctagtttgtaatgtagagcctttctagagtagtataaat 28610371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 8414874 - 8414808
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataata 106  Q
    ||||||||||||| |||||||  || | | ||||||  |||||||||||||| ||||||||||||||    
T  8414874 aataatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataata 8414808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 29833456 - 29833206
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||| | || ||||| || | |||||| |||||||||||||| ||| ||| |||||||  ||||| ||||||||||||  |||||||||||||     
T  29833456 aatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaag 29833357  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | |||| |||| || |||||| |||||||||||||||||    
T  29833356 ctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttcttt 29833259  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  29833258 gtttctagatatttctagtttgtaatggagagccttcctagagtagtataaat 29833206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 2404181 - 2403958
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||| ||||||||  || ||| |||||||  ||||| ||||||||||||  ||||||||||||| |||||||| ||| |||||  |||||||    
T  2404181 aataatgtggaaatctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagatactactaaa--taagcac 2404084  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2404083 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 2403984  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||| ||||||||||| ||||||||    
T  2403983 gagagtcttcctagagtagtataaat 2403958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 734932 - 734709
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||||||| ||||  || ||| |||||||  ||||| ||||||||||||  |||||| |||||| |||||||||||| |||||  |||||||    
T  734932 aataatgtggaagtctttagaagactaaagaataatatagaagtctctagaatactagggaataacaaggaagctactagacactactaaa--taagcac 734835  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| ||||||||||   |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  734834 tagggaagtcttaacttttctagatccttctaggtttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 734735  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||| | ||||||||    
T  734734 gagagccttcctagaatagtataaat 734709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 8933911 - 8933671
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacactcta-------aaatt 132  Q
    |||||||||||| | |||| |  || ||| || |||| |||||| |||| |||||||  ||||||||||||| ||| |||||||||||       ||||     
T  8933911 aataatatggaaatttctaaaaaactaaagaaaaatatggaagtctctaaaatactatggaataataaggaagctattagacactctactaaataaaata 8933812  T
Q  133 aagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctt---------tgtttctagatat 223  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||| || |||||| | ||||| | ||||||         ||||||||||||     
T  8933811 aagcactaggaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataa 8933712  T
Q  224 ttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||   || |||||||||||| ||||||||    
T  8933711 ttctagtttgtaatgtagaaccttcctagagtagtataaat 8933671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 29833852 - 29833925
Alignment:
Q  191 catatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||    
T  29833852 catatctctagacttttctttgtttctagatatttctagttggtaatggagagccttcctagagtagtataaat 29833925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 10909108 - 10909161
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  10909108 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaat 10909161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 2410136 - 2410080
Alignment:
Q  208 ctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||||||| ||||||||    
T  2410136 ctttgtttctagatattgctaatttgtaatggagagccttcctagagtagtataaat 2410080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 419284 - 419213
Alignment:
Q  49 gaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactaga 120  Q
    |||||||||||| ||| ||| ||||||| |||||| |||| |||  ||||||||||||||||| ||||||||    
T  419284 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 419213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 10911352 - 10911405
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   || |||||||||||| ||||||||    
T  10911352 tgtttctagatatttctagtttgtaatgtagacccttcctagagtagtataaat 10911405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 18353725 - 18353792
Alignment:
Q  126 taaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccat 193  Q
    ||||||| |||||| | |||||||||   |||||| |||||||||||||||||||||| || ||||||    
T  18353725 taaaattgagcactaggaaaatcttatcttttctagatccttctagtcatatgaactagagtatccat 18353792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 13011698 - 13011751
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||| |||||| ||||   ||||||||||||||| ||||||||    
T  13011698 tgtttctagatatttttagtttttaatgtagagccttcctagagtagtataaat 13011751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 264
Target Start/End: Complemental strand, 18966489 - 18966242
Alignment:
Q  29 gaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacactcta- 127  Q
    ||||| |||| |||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||| | |||||||||| | |||||||| ||||||     
T  18966489 gaatactaaagaataatgtggaagtctctagaacaccaaagaataatagggaagtctctagaatactagataataataaggtagctactagatactctac 18966390  T
Q  128 -----------aaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttc 216  Q
               |||||||||||| | |||||||||||||||||| ||||||||||||||| | |||| || |||||||||||| |||||||||| |||||    
T  18966389 taaatgaaataaaattaagcactaggaaaatcttaatgtttctagatccttctagtcatacgtactagagtatccatatctcttgacttttcttggtttc 18966290  T
Q  217 tagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||| ||| || | | | ||||||||||| ||||||||    
T  18966289 tagatatttctagtgtgtcatggagtgtcttcctagagtagtataaat 18966242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 8535493 - 8535578
Alignment:
Q  126 taaaattaagcactggaaaaatcttaatgtttctaa-atccttctagtcatatgaactatagcatccatatctctagacttttctt 210  Q
    |||||| ||||||| ||||||||||| | ||| | | |||||||||||||||| ||||| || |||||||||||||||||||||||    
T  8535493 taaaataaagcactagaaaaatcttatttttttttagatccttctagtcatataaactaaagtatccatatctctagacttttctt 8535578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 4530835 - 4530888
Alignment:
Q  211 tgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||||||||   ||||||||||||||| ||||||||    
T  4530835 tgtttctagatatttctagtttgtaatgtagagccttcctagagtagtataaat 4530888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 1701094 - 1701179
Alignment:
Q  126 taaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    ||||||||| |||| |  |||||||||  |||||| ||||||||||||||||||| || |  |||||||| ||||| |||||||||    
T  1701094 taaaattaaacactagggaaatcttaacttttctagatccttctagtcatatgaattagattatccatatttctaggcttttcttt 1701179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 4533138 - 4533185
Alignment:
Q  217 tagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||||   ||||||||||||||| ||||||||    
T  4533138 tagatatttctagtttgtaatgtagagccttcctagagtagtataaat 4533185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 21268510 - 21268261
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||| | || ||||| || | |||||| |||||||||||||| ||| ||| |||||||  ||||| ||||||||||||  |||||||||||||     
T  21268510 aatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataatatagaagtctctagaatactagggaataataaggaag 21268411  T
Q  113 ctactagacactctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttg 212  Q
    ||||||||||||   |||| ||  ||| |  || |||| |  |||||| |||||||||||  |||| |||| || |||||||||||||||||||||||||    
T  21268410 ctactagacactactaaataaa--actagggaagtcttgacttttctagatccttctagttttatgtactaaagtatccatatctctagacttttctttg 21268313  T
Q  213 tttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  21268312 tttctagatatttctagtttgtaatggagagccttcctagagtagtataaat 21268261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 36379821 - 36379598
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||||||||||||  || ||| |||||||  ||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  |||||||    
T  36379821 aataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaa--taagcac 36379724  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||     
T  36379723 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctggacttttctttgtttccagatatttctagtttgtaatg 36379624  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  36379623 gagagccttcctagagtagtataaat 36379598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 4876822 - 4877045
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||||||||||||||||||      || ||||||| |||||  |||||||||||   ||||||||||||| |||||||| ||| |||||  |||||||    
T  4876822 aataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaa--taagcac 4876919  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4876920 tagggaagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 4877019  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  4877020 gagagccttcctagagtagtataaat 4877045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 4879150 - 4879373
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||||||||||||||||||      || ||||||| |||||  |||||||||||   ||||||||||||| |||||||| ||| |||||  |||||||    
T  4879150 aataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctactagaaactactaaa--taagcac 4879247  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4879248 tagggaagtcttaacttttctagatccttctaggcttatgtactatagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatg 4879347  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  4879348 gagagccttcctagagtagtataaat 4879373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 36377563 - 36377313
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||| | || ||||| |||  |||||| ||||||||||||||  || ||| |||||||  ||||| ||||||||||||  |||||||||||||     
T  36377563 aatatggaagactctagaatactaaggaataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 36377464  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || ||||||  |||||| |||||||||| | |||| |||| || ||||||||||||  ||||||||||    
T  36377463 ctactagacactactaaa--taagcactagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctgaacttttcttt 36377366  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||  ||||||||||| |||||||| | ||||||||||||||| ||||||||    
T  36377365 gttttcagatatttctactttgtaatggagagccttcctagagtagtataaat 36377313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 24519508 - 24519285
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||||||||||||||||||      || ||||||| |||||  |||||||||||   ||||||||||||| |||| ||| ||| |||||  |||||||    
T  24519508 aataatatggaagtctctagaatggtgaagaataatatggaagactctagaatactggggaataataaggaagctaccagatactactaaa--taagcac 24519411  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| || | || ||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  24519410 tagggaagtcttaacttttctagatccttctaggcttatgtacaaaagtatccatatctctagacttttctttgtttctagatatttctagtttataatg 24519311  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  24519310 gagagccttcctagagtagtataaat 24519285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 21268540 - 21268447
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataata 106  Q
    |||||||||||| || ||||  | || ||||||||||||| |||||||  || | | ||||||  |||||| ||||||| ||||||||||||||    
T  21268540 aatatggaagtctctagaatggtgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataata 21268447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 23164594 - 23164371
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||||||||||||  || ||| |||||||  ||||| ||||||||||||  ||||||||||||| |||||||||||| |||||  ||| |||    
T  23164594 aataatgtggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaagctactagacactactaaa--taaacac 23164497  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||     
T  23164496 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatg 23164397  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  23164396 gagagccttcctagagtagtataaat 23164371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 37207702 - 37207925
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||||||||||||  || ||| |||||||  ||||| | ||||||||||  ||||||||||||| |||||||||||| |||||  |||||||    
T  37207702 aataatgtggaagtctctagaagactaaagaataatatagaagtctgtagaatactagggaataataaggaagctactagacactactaaa--taagcac 37207799  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||     
T  37207800 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatgtctctagacttttctttgtttctagatatttctagttggtaatg 37207899  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  37207900 gagagccttcctagagtagtataaat 37207925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 11850261 - 11850038
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||||||||||||  || ||| |||||||  ||||| |||| |||||||  |||||||||| || |||||||||||| |||||  |||||||    
T  11850261 aataatgtggaagtctctagaagactaaagaataatatagaagtctctaaaatactagggaataataagaaagctactagacactactaaa--taagcac 11850164  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| || | || |||||||||||||||||||||||||||||||||||||||||||| |||||     
T  11850163 tagggaagtcttaaattttctagatccttctaggcttatgtacaagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatg 11850064  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||||||||||||||| ||||||||    
T  11850063 gagagccttcctagagtagtataaat 11850038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 264
Target Start/End: Complemental strand, 1779579 - 1779339
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacactc-------taaaatt 132  Q
    |||||||||||||| ||||||  || ||| |||||||  ||||| |||| |||||||  ||||||||||||| |||||||||||||       ||||||     
T  1779579 aataatatggaagtttctagaaaactaaagaataatatagaagtctctaaaatactatggaataataaggaagctactagacactccactaaataaaata 1779480  T
Q  133 aagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctt---------tgtttctagatat 223  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||| | ||||| | ||||||         ||||||||||||     
T  1779479 aagcactagaaaaatcttaatgtttctagatccttctagtcatatgaactagagtatccatgtttctaggcctttctttgtaatcaatgtttctagataa 1779380  T
Q  224 ttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  1779379 ttctagtttgtaatgtagagccttcctagagtggtataaat 1779339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 22600742 - 22600965
Alignment:
Q  40 aataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactagacact-ctaaaattaagcac 138  Q
    |||||| ||||||||||||||  || |||||||||||  ||||| ||||||||||||  |||||||||| || ||||| |||||| |||||  |||||||    
T  22600742 aataatgtggaagtctctagaagactaaataataatatagaagtctctagaatactatggaataataagaaagctacttgacactactaaa--taagcac 22600839  T
Q  139 tggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatc 238  Q
    | |  || ||||||  |||||| |||||||||| | |||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||     
T  22600840 tagggaagtcttaacttttctagatccttctaggcttatgtactagagtatccatatctctagacttttctttgtttctagatatttctagttggtaatg 22600939  T
Q  239 gggagccttcctagagtggtataaat 264  Q
    | ||| ||| ||| ||| ||||||||    
T  22600940 gagagtcttgctaaagtagtataaat 22600965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 11852546 - 11852296
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    |||||||||| | || ||||| ||  |||||||  |||||||||||||  || ||| |||||||  ||||| ||||||||||||  |||||||||||||     
T  11852546 aatatggaagactctagaatactatgaaataatgaggaagtctctagaagactaaagaataatatagaagtctctagaatactagggaataataaggaag 11852447  T
Q  113 ctactagacact-ctaaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttcttt 211  Q
    |||||||||||| |||||  |||||||| |  || || |||  ||||||   |||||||| | |||| |||| || |||||||||||||||||||| |||    
T  11852446 ctactagacactactaaa--taagcactagggaagtcataacttttctaggaccttctaggcttatgtactagagtatccatatctctagacttttattt 11852349  T
Q  212 gtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||||||||||| ||||| | ||||||||||||||| ||||||||    
T  11852348 gtttctagatatttctagttggtaatggagagccttcctagagtagtataaat 11852296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 1779840 - 1779600
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaat 112  Q
    ||||||||||||| | ||||| |||| || ||| |||||||||| | | ||| ||| ||||||| |||||| |||||||||||||||||||||   |||     
T  1779840 aatatggaagtccttagaatactaaagaaaaatgtggaagtctccataacactaaagaataatatggaagtctctagaatactaaagaataatgtcgaag 1779741  T
Q  113 ctactagacactc-------taaaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagactt 205  Q
    |||||||||| ||       |||||| |||| || |  ||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||||| | |    
T  1779740 ctactagacattctactggataaaataaagcgctagggaaatcttaatgtttctagatccttctagtcatatgaactagaatatccctatctctaggcct 1779641  T
Q  206 ttctt---------tgtttctagatatttctagtttgtaat 237  Q
    ||| |         |||||||||||||||||||||||||||    
T  1779640 ttccttgtaatcaatgtttctagatatttctagtttgtaat 1779600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 37215407 - 37215516
Alignment:
Q  155 tttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagag 254  Q
    |||||| |||||||||| | |||  |||| || |||||| |||||| |||||||||||||||||||||||||||||| |||||   ||||||||||||||    
T  37215407 tttctagatccttctaggcttatatactagagtatccatgtctctaaacttttctttgtttctagatatttctagttggtaatgaagagccttcctagag 37215506  T
Q  255 tggtataaat 264  Q
    | ||||||||    
T  37215507 tagtataaat 37215516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 37207645 - 37207738
Alignment:
Q  13 aatatggaagtccctggaataataaaaaataatatggaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataata 106  Q
    |||||||||||| || |||| || || ||||||||||||| |||||||  || |   ||||||  |||||| ||||||| ||||||||||||||    
T  37207645 aatatggaagtctctagaatgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataata 37207738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 128 - 264
Target Start/End: Original strand, 29257 - 29392
Alignment:
Q  128 aaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatccatatctctagacttttctttgtttctagatatttct 227  Q
    |||||||||||| |  ||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||||| |||||||||||||||| |    
T  29257 aaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatctctagacttttc-ttgtttctagatattttt 29355  T
Q  228 agtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||| | ||| ||||||||||| ||||||||    
T  29356 agtttgtaatggagagtcttcctagagtagtataaat 29392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 128 - 264
Target Start/End: Original strand, 31570 - 31707
Alignment:
Q  128 aaattaagcactggaaaaatcttaatgtttctaaatccttctagtcatatgaactatagcatcc--atatctctagacttttctttgtttctagatattt 225  Q
    |||||||||||| |  ||||||||||||||||| ||||||||||||||||| |||| | |||||  ||||||||||||||||| |||||| |||||||||    
T  31570 aaattaagcactagggaaatcttaatgtttctagatccttctagtcatatgtactagaacatccatatatctctagacttttc-ttgtttttagatattt 31668  T
Q  226 ctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||||||||||| | ||||||||||||||| ||||||||    
T  31669 ctagtttgtaatggagagccttcctagagtagtataaat 31707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 1580 - 1669
Alignment:
Q  175 tatgaactatagcatccatatctctagacttttctttgtttctagatatttctagtttgtaatcgggagccttcctagagtggtataaat 264  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  1580 tatgtactagagtatccatatctctagacttttctttgtttctagatatttctagtttgtaatggagagccttcctagagtagtataaat 1669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 195
Target Start/End: Original strand, 21199149 - 21199281
Alignment:
Q  70 aataatagggaagtatctagaatactaaagaataataaggaatctactagacactcta-------aaattaagcactggaaaaatcttaatgtttctaaa 162  Q
    ||||||| |||||| ||||||||||||  ||||||||||||| |||||| ||||||||       |||| ||||||| |  ||||||||||||||||| |    
T  21199149 aataatatggaagtctctagaatactatggaataataaggaagctactatacactctactaaataaaataaagcactagttaaatcttaatgtttctaga 21199248  T
Q  163 tccttctagtcatatgaactatagcatccatat 195  Q
    ||||||||||||||||||||  || ||||||||    
T  21199249 tccttctagtcatatgaactggagtatccatat 21199281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 11287 - 11358
Alignment:
Q  49 gaagtctctagaccaccaaataataatagggaagtatctagaatactaaagaataataaggaatctactaga 120  Q
    |||||||||||| ||| ||| ||||||| |||||| |||| |||  ||||||||||||||||| ||||||||    
T  11287 gaagtctctagaacactaaagaataatatggaagtctctataatgttaaagaataataaggaagctactaga 11358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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