View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_high_29 (Length: 277)
Name: NF0238_high_29
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_high_29 |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 47594056 - 47593809
Alignment:
| Q |
1 |
tgaatgactattaagatatgaaacaaccgttgccattgtaggtcttatatttggattttcttgaacacataacaaaccaatctgtatgcacttaataact |
100 |
Q |
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| T |
47594056 |
tgaatgactattaagatatgaaacaaccgttgccattgtaggtcttacatttggattttcttgaacacataacaaaccaatctgtatgcacttaataact |
47593957 |
T |
|
| Q |
101 |
tcaatacgagaataattttcaatttttggatccaatatgattaatggagtttcattcttccattgtctccattcctgtaaagtttatcatattagttagt |
200 |
Q |
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| T |
47593956 |
tcaatacgagaataattttcaatttttggatccaatatgattaatggagtttcattcttccattgtctccatacctgtaaagtttatcatattagttagt |
47593857 |
T |
|
| Q |
201 |
caaaacatcaagcctctctcaacttgaataaacttcaattgactaact |
248 |
Q |
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| T |
47593856 |
caaaacatcaagcctctctcaacttgaataaacttcaattgactaact |
47593809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 47619930 - 47619822
Alignment:
| Q |
12 |
taagatatgaaacaaccgttgccattgtaggtcttatatttggattttcttgaacacataacaaaccaatctgtatgcacttaataacttcaatacgaga |
111 |
Q |
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| T |
47619930 |
taagatatgaaacgactgttgccattgtaggtctagcatttggattttcttggacacataataaaccaatttgaatgcattttataacttcaatttgaga |
47619831 |
T |
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| Q |
112 |
ataattttc |
120 |
Q |
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| T |
47619830 |
atatttttc |
47619822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 47584947 - 47584895
Alignment:
| Q |
29 |
gttgccattgtaggtcttatatttggattttcttgaacacataacaaaccaat |
81 |
Q |
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| T |
47584947 |
gttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaat |
47584895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 47628110 - 47628050
Alignment:
| Q |
9 |
tattaagatatgaaacaaccgttgccattgtaggtcttatatttggattttcttgaacaca |
69 |
Q |
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| T |
47628110 |
tattaagatatgaaacaacagttcccattgtaggcctatcatctggattttcttggacaca |
47628050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 469413 - 469511
Alignment:
| Q |
14 |
agatatgaaacaaccgttgccattgtaggtcttatatttggattttcttgaacacataacaaaccaatctgtatgcacttaataacttcaatacgagaa |
112 |
Q |
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| T |
469413 |
agatatgaaacagcttgtgccattgtaggtctatcatcaggattttcttgaacacataataaaccaagctgaatgcatttaataacttcactatgagaa |
469511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 3081264 - 3081219
Alignment:
| Q |
58 |
ttcttgaacacataacaaaccaatctgtatgcacttaataacttca |
103 |
Q |
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| T |
3081264 |
ttcttgtacacataacaaaccaatgtgtatgcatttaataacttca |
3081219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 3095701 - 3095656
Alignment:
| Q |
58 |
ttcttgaacacataacaaaccaatctgtatgcacttaataacttca |
103 |
Q |
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| T |
3095701 |
ttcttgtacacacaacaaaccaatgtgtatgcatttaataacttca |
3095656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 14919 - 15038
Alignment:
| Q |
61 |
ttgaacacataacaaaccaatctgtatgcacttaataacttcaatacgagaataattttc---aatttttggatccaatatgattaatggagtttcattc |
157 |
Q |
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| T |
14919 |
ttgaacacataatagaccaatctgaatgcacttaatgacttcatttgtagaataatcttctttaatatttgggtccaatatacttaaaggtgtttgatcc |
15018 |
T |
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| Q |
158 |
ttccattgtctccattcctg |
177 |
Q |
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| T |
15019 |
atccattgtctccatacctg |
15038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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