View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0238_high_3 (Length: 541)
Name: NF0238_high_3
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 10663450 - 10663730
Alignment:
| Q |
30 |
aatattatcctgtttgtatatatgtttttctgagnnnnnnncctttgtgtgtataatgaagtaatggagtctaagtcaatatccatcttcatttggccaa |
129 |
Q |
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| T |
10663450 |
aatattatgctgtttgtatatatgtttttctgagtttttttcctttgtgtgtataatgaagtaatggagtctaagtcaatatccatcttcatttggccaa |
10663549 |
T |
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| Q |
130 |
atccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctgacatgcatgagtatccaaattactcagaatattaattaagtcattat |
229 |
Q |
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| T |
10663550 |
aaccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctgacatgcatgagtatccaaattactcagaatattaattaagtcattat |
10663649 |
T |
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| Q |
230 |
cataagtggttagatgttcattattaagtccaatattttcatttgaacaattcataattaagatataagtccactctttct |
310 |
Q |
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| T |
10663650 |
cataagtggttagatgttcattattaagtccaataatttcatttgaacaattcataattaagatataagtccactctttct |
10663730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 493
Target Start/End: Original strand, 10663925 - 10663994
Alignment:
| Q |
424 |
ctattagcatgcctaaatgccttaacttgtgtgtatgtccacnnnnnnnaaaattaggttctcacaggtt |
493 |
Q |
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| T |
10663925 |
ctattagcatgcctaaatgccttaacttgtgtgtatgtccactttttctaaaattaggctctcacaggtt |
10663994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 10663718 - 10663757
Alignment:
| Q |
319 |
gtccactctttctaatcatcttcttgtatatgccaaaagg |
358 |
Q |
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| T |
10663718 |
gtccactctttctaatcatcttcttgtaaatgccaaaagg |
10663757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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