View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0238_high_33 (Length: 241)
Name: NF0238_high_33
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 22457438 - 22457238
Alignment:
| Q |
19 |
atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22457438 |
atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttc |
22457339 |
T |
|
| Q |
119 |
ctcaatcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgctt |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22457338 |
ctcaatcaatgagatgcaaaaagtggagaaactacaaattcgcgcaaacggatatgacacagttattgacatgcatttgaattcaccaccacctatgctt |
22457239 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
|
| |
|
|
| T |
22457238 |
c |
22457238 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 22480419 - 22480219
Alignment:
| Q |
19 |
atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22480419 |
atgaagtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttc |
22480320 |
T |
|
| Q |
119 |
ctcaatcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgctt |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22480319 |
ctcaatcaatgagatgcaaaaagtggagaaactacaaattcgcgcaaacggatatgacacagttattgacatgcatttgaattcaccaccacctatgctt |
22480220 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
|
| |
|
|
| T |
22480219 |
c |
22480219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 22629367 - 22629232
Alignment:
| Q |
23 |
agtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctca |
122 |
Q |
| |
|
||||||| |||||||| |||| |||||||| ||||| || |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
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| T |
22629367 |
agtggtagagctaatcgaagatctaggaaagctaaatcagctaagggaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctca |
22629268 |
T |
|
| Q |
123 |
atcaatgagatgcaaaaaatggagaaactacaaatt |
158 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| |
|
|
| T |
22629267 |
atcaataagatgcaacaattggagaaactacaaatt |
22629232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 22366840 - 22366652
Alignment:
| Q |
31 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
130 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||| | |
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|
| T |
22366840 |
agctaattgaagagctaggaaaactaaagcagctaagggaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataa |
22366741 |
T |
|
| Q |
131 |
gatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacctatgcttc |
219 |
Q |
| |
|
||||||| || ||||||||||| | ||| | | | || ||||| ||| | ||||| || ||||||||||||| ||||||||||||| |
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|
| T |
22366740 |
gatgcaacaactggagaaactaaatattagtggagtcgaatatgagacattcattgatctggatttgaattcacccccacctatgcttc |
22366652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 22441661 - 22441540
Alignment:
| Q |
31 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
130 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||| |||||| ||||| ||||||||||||| ||| |||||||||||||||| ||||||||| || |
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|
| T |
22441661 |
agctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatcaacga |
22441562 |
T |
|
| Q |
131 |
gatgcaaaaaatggagaaacta |
152 |
Q |
| |
|
||||||| || ||||||||||| |
|
|
| T |
22441561 |
gatgcaacaattggagaaacta |
22441540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 22352726 - 22352605
Alignment:
| Q |
31 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
130 |
Q |
| |
|
||||||| ||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||| | |
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|
| T |
22352726 |
agctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatca |
22352627 |
T |
|
| Q |
131 |
gatgcaaaaaatggagaaacta |
152 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
22352626 |
gatgcaaaaattggagaaacta |
22352605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 22356897 - 22356785
Alignment:
| Q |
40 |
aagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaa |
139 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||| ||||| |||| ||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22356897 |
aagagctgggaaaactaaagcagcttagggaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaa |
22356798 |
T |
|
| Q |
140 |
aatggagaaacta |
152 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
22356797 |
attggagaaacta |
22356785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 22634382 - 22634194
Alignment:
| Q |
23 |
agtggtaaagctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctca |
122 |
Q |
| |
|
||||||| || |||| ||||||||||||| |||||||| || |||||||| |||| |||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
22634382 |
agtggtagagttaatagaagagctaggaaagctaaagcagcttagggaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctca |
22634283 |
T |
|
| Q |
123 |
atcaatgagatgcaaaaaatggagaaactacaaattcgcgcaaacggatatggcacagttattgacatgcatttgaattcaccaccacc |
211 |
Q |
| |
|
||||| |||||||| || ||||||||||| | ||| | | || | ||||| |||| | ||||| ||| ||||||||||||| ||||| |
|
|
| T |
22634282 |
atcaacaagatgcaacaattggagaaactaaatattagaggaatcagatataacacattcattgatatggatttgaattcacccccacc |
22634194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 22466864 - 22466742
Alignment:
| Q |
31 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
130 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||| ||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||| | |
|
|
| T |
22466864 |
agctaattcaagagctaggaaagctaaataagataagaaaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatca |
22466765 |
T |
|
| Q |
131 |
gatgcaaaaaatggagaaactac |
153 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
22466764 |
aatgcaacaaatggagaaactac |
22466742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 22430119 - 22430008
Alignment:
| Q |
41 |
agagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatgagatgcaaaaa |
140 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||| |||| ||||||| ||||| ||| ||||||||| ||| ||||||||||||| ||||||| || |
|
|
| T |
22430119 |
agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa |
22430020 |
T |
|
| Q |
141 |
atggagaaacta |
152 |
Q |
| |
|
||||||||||| |
|
|
| T |
22430019 |
ttggagaaacta |
22430008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 37929672 - 37929608
Alignment:
| Q |
31 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagt |
95 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||||| |||| ||||||||||||| |
|
|
| T |
37929672 |
agctaatccaagagctaggaaagctaaaacagctaagggaattgggcttggccggtgttaggagt |
37929608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 22435547 - 22435442
Alignment:
| Q |
31 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagtggatacatgagtgctatatcttcctcaatcaatga |
130 |
Q |
| |
|
|||||||| |||||||||||| |||| || || |||||||||| |||| | | |||||| || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
22435547 |
agctaatcatagagctaggaaagctaacacagcttagggaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataa |
22435448 |
T |
|
| Q |
131 |
gatgca |
136 |
Q |
| |
|
|||||| |
|
|
| T |
22435447 |
gatgca |
22435442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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