View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0238_high_6 (Length: 506)
Name: NF0238_high_6
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0238_high_6
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 10663450 - 10663730
Alignment:
Q
30
aatattatcctgtttgtatatatgtttttctgagnnnnnnncctttgtgtgtataatgaagtaatggagtctaagtcaatatccatcttcatttggccaa
129
Q
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10663450
aatattatgctgtttgtatatatgtttttctgagtttttttcctttgtgtgtataatgaagtaatggagtctaagtcaatatccatcttcatttggccaa
10663549
T
Q
130
atccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctgacatgcatgagtatccaaattactcagaatattaattaagtcattat
229
Q
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
10663550
aaccgcattatgtttattgttaaactaaaaatagtttattcaccatacttctgacatgcatgagtatccaaattactcagaatattaattaagtcattat
10663649
T
Q
230
cataagtggttagatgttcattattaagtccaatattttcatttgaacaattcataattaagatataagtccactctttct
310
Q
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
10663650
cataagtggttagatgttcattattaagtccaataatttcatttgaacaattcataattaagatataagtccactctttct
10663730
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 491
Target Start/End: Original strand, 10663925 - 10663992
Alignment:
Q
424
ctattagcatgcctaaatgccttaacttgtgtgtatgtccacnnnnnnnaaaattaggttctcacagg
491
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
T
10663925
ctattagcatgcctaaatgccttaacttgtgtgtatgtccactttttctaaaattaggctctcacagg
10663992
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 10663718 - 10663757
Alignment:
Q
319
gtccactctttctaatcatcttcttgtatatgccaaaagg
358
Q
|||||||||||||||||||||||||||| |||||||||||
T
10663718
gtccactctttctaatcatcttcttgtaaatgccaaaagg
10663757
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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