View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0238_high_9 (Length: 485)
Name: NF0238_high_9
Description: NF0238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0238_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 218 - 462
Target Start/End: Original strand, 41234130 - 41234376
Alignment:
| Q |
218 |
cttataaaccttaatgaga----gtggccaattagagattttgtaggggattaaaaaattgaaatcgccactaatgtctcgtcatttcgtcaataaattt |
313 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41234130 |
cttataaaccttaatgagagagagtggccaattagagattttgtaggggattaaaaaattgaaatcgccactaatgtctcgtcatttcgtcaataaattt |
41234229 |
T |
|
| Q |
314 |
agtgagaaaaactgagaagttactcaaaattttcatatatatttttcatctatatcttttgttgactgtatttcccaacnnnnnnnnnngactaatcaat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41234230 |
agtgagaaaaactgagaagttactcaaaattttcatatatatttttcatctatatcttttgttgactgtatttcccaac--ttttttttgactaatcaat |
41234327 |
T |
|
| Q |
414 |
agttctatctatttcctaacttcaatatatttccttaattgctaagaaa |
462 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41234328 |
agttctatctatttcctaactttaatatatttccttaattgctaagaaa |
41234376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 41233982 - 41234047
Alignment:
| Q |
68 |
aaattaggatattctattactctatttgaacgtataaaatttacattgtatgtgttggttattacc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41233982 |
aaattaggatattctattactctatttgaacgtataaaatttacattgtatgtgttggttattacc |
41234047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2226 times since January 2019
Visitors: 2399